Factsheet for HORVU1Hr1G038010.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G022750.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00340.1	HORVU5Hr1G022750.1	AT4G15510.1	23221595
ATCG00340.1	HORVU5Hr1G022750.1	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G064630.2	Barley	plastid	97.01	90.75
HORVU4Hr1G045260.1	Barley	cytosol	25.52	81.02
Solyc12g032990.1.1	Tomato	plastid	31.49	75.69
HORVU0Hr1G029730.1	Barley	endoplasmic reticulum	21.38	72.09
HORVU3Hr1G004700.1	Barley	plastid	69.66	66.89
AGP50754	Barley	plastid	88.05	52.18
HORVU6Hr1G049190.1	Barley	golgi, mitochondrion, peroxisome, plasma membrane	88.05	52.18
CAA33995	Rice	plasma membrane	86.9	51.5
TraesCS1D01G181100.1	Wheat	golgi, mitochondrion, peroxisome, plasma membrane	85.75	50.89
ATCG00340.1	Thale cress	golgi, mitochondrion, plasma membrane, plastid	84.6	50.14
HORVU2Hr1G022470.1	Barley	cytosol, plastid	5.98	50.0
Solyc12g032980.1.1	Tomato	nucleus	13.33	44.27
HORVU3Hr1G004680.1	Barley	cytosol, plasma membrane, plastid	33.1	32.51
HORVU4Hr1G045310.1	Barley	extracellular	27.13	32.42
HORVU4Hr1G045300.1	Barley	cytosol	36.78	28.52
HORVU6Hr1G037020.1	Barley	plastid	12.64	25.0
HORVU6Hr1G049200.2	Barley	cytosol, plasma membrane, plastid	40.92	23.73
AGP50755	Barley	plastid	40.92	23.73
HORVU5Hr1G064640.2	Barley	cytosol, plasma membrane, plastid	40.69	23.6
GSMUA_AchrUn_...	Banana	cytosol, golgi	28.74	2.39
HORVU0Hr1G034550.1	Barley	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	UniProt:A0A287F5X9	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009522	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:HORVU1Hr1G038010	EnsemblPlants:HORVU1Hr1G038010.4	InterPro:IPR036408	PFAM:PF00223
PRINTS:PR00257	ScanProsite:PS00419	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_CS	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128
PANTHER:PTHR30128:SF4	SUPFAM:SSF81558	TMHMM:TMhelix	UniParc:UPI000B4746F5	SEG:seg	:

Description

No Description!

Coordinates

chrchr1H:+:261297469..261299672

Molecular Weight (calculated)

48369.0 Da

IEP (calculated)

7.150

GRAVY (calculated)

0.083

Length

435 amino acids

Sequence
(BLAST)

001: METKPFVVQK RGISSQSSFV RTFRGNFFGL DRTFSSCCYS RIQGEYVRWN NLLDVLPYPQ GLGPLLTGQW NLYAQNPDSS NHLFGTAQGA GTTILTLLGG
101: FHPQTQSLWL TDMAHHHLAI AFIFLIVGHM YRTNFGIGHS IKDLLEAHTS PGGRLGRGHK GLYDTINNLI HFQLGLALAS LGVITSLVAQ HMYSLPPYAF
201: IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA
301: QWIQSAHGKT TYGLDILLSS TNGPSFNAGR SLWLPGWLND VNENSNSLFL TIGPGDFLIH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD
401: GPGRGGTCDI SAWDAFYLVV LWMLNTIGWV TFYWH

Best Arabidopsis Sequence Match ( ATCG00340.1 )
(BLAST)

001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG

Arabidopsis Description

PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.