CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 15682463
plastid: 16758444

msms PMID: 16758444 doi

B Granvogl, V Reisinger, LA Eichacker

Department für Biologie I, Ludwig-Maximilians-Universität, München, Germany.

msms PMID: 15682463 doi

C Ciambella, P Roepstorff, EM Aro, L Zolla

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G049200.2	Barley	cytosol, plasma membrane, plastid	100.0	100.0
HORVU5Hr1G064640.2	Barley	cytosol, plasma membrane, plastid	99.33	99.33
Bra041122.1-P	Field mustard	cytosol, vacuole	72.0	98.9
HORVU3Hr1G004680.1	Barley	cytosol, plasma membrane, plastid	58.27	98.65
TraesCSU01G200900.1	Wheat	cytosol, plasma membrane, plastid	98.53	98.53
CAA33996	Rice	plasma membrane	97.73	97.73
CDY67706	Canola	plasma membrane, vacuole	75.2	97.07
CDY15767	Canola	cytosol, plasma membrane, plastid	97.07	97.07
CDX80066	Canola	cytosol, plasma membrane, plastid	97.07	97.07
CDX99951	Canola	cytosol, plasma membrane, plastid	97.07	97.07
CDY29455	Canola	cytosol, plasma membrane, plastid	97.07	97.07
HORVU2Hr1G022470.1	Barley	cytosol, plastid	6.67	96.15
KRH55005	Soybean	cytosol, plasma membrane	11.33	92.39
PGSC0003DMT400013730	Potato	plastid	27.07	87.88
HORVU6Hr1G037020.1	Barley	plastid	25.6	87.27
Solyc12g033040.1.1	Tomato	cytosol	20.53	83.24
HORVU4Hr1G045310.1	Barley	extracellular	35.07	72.25
HORVU1Hr1G038010.4	Barley	plastid	23.73	40.92
HORVU5Hr1G064630.2	Barley	plastid	24.53	39.57
HORVU0Hr1G029730.1	Barley	endoplasmic reticulum	6.8	39.53
HORVU6Hr1G049190.1	Barley	golgi, mitochondrion, peroxisome, plasma membrane	34.93	35.69
AGP50754	Barley	plastid	34.93	35.69
HORVU3Hr1G004700.1	Barley	plastid	20.8	34.44
HORVU4Hr1G045260.1	Barley	cytosol	5.73	31.39
HORVU4Hr1G045300.1	Barley	cytosol	15.87	21.21
CDY67707	Canola	cytosol	0.0	0.0
HORVU0Hr1G034550.1	Barley	cytosol	0.0	0.0

Protein Annotations

MapMan:1.1.4.2.1	Gene3D:1.20.1130.10	EntrezGene:4525132	EnsemblPlants:AGP50755	EnsemblPlantsGene:AGP50755	ProteinID:AGP50755
ProteinID:AGP50755.1	ProteinID:AMA20246.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009522	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0016491	GO:GO:0018298	GO:GO:0019538	GO:GO:0022900	GO:GO:0046872
GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	InterPro:IPR036408	ENA:KC912687.1:CDS:complement(39085..41337)	HAMAP:MF_00458
PFAM:PF00223	PIRSF:PIRSF002905	PRINTS:PR00257	ScanProsite:PS00419	InterPro:PSI_PsaA	InterPro:PSI_PsaA/B
InterPro:PSI_PsaA/B_CS	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF8	MetaCyc:PWY-101	GO:S4Z1X0
UniProt:S4Z1X0	SUPFAM:SSF81558	TIGRFAMs:TIGR01335	TMHMM:TMhelix	UniParc:UPI0000E8A893	RefSeq:YP_874653.1
SEG:seg	:	:	:	:	:

Description

psaAphotosystem I P700 apoprotein A1

Coordinates

chrPt:-:39085..41337

Molecular Weight (calculated)

83137.2 Da

IEP (calculated)

7.117

GRAVY (calculated)

0.252

Length

750 amino acids

Sequence
(BLAST)

001: MIIRSPEPEV KIVVDRDPVK TSFEEWARPG HFSRTLAKGP DTTTWIWNLH ADAHDFDSHT GDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQLWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQIHVSLP INQFLDAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYA EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGLK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGST TIVVAHHMYS MPPYPYLATD YGTQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTTRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPIF AQWVQNIHAT APGVTAPGAT
501: TSTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGTI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG

Best Arabidopsis Sequence Match ( ATCG00350.1 )
(BLAST)

001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG

Arabidopsis Description

PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.