Factsheet for HORVU3Hr1G004700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plastid

plastid: 21440687

msms PMID: 21440687 doi

M Plöscher, V Reisinger, LA Eichacker

TRION Pharma GmbH, Munich, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G022750.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00340.1	HORVU5Hr1G022750.1	AT4G15510.1	23221595
ATCG00340.1	HORVU5Hr1G022750.1	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g032980.1.1	Tomato	nucleus	23.84	82.44
HORVU0Hr1G029730.1	Barley	endoplasmic reticulum	20.31	71.32
HORVU1Hr1G038010.4	Barley	plastid	66.89	69.66
HORVU5Hr1G064630.2	Barley	plastid	67.11	65.38
HORVU6Hr1G049190.1	Barley	golgi, mitochondrion, peroxisome, plasma membrane	91.17	56.27
AGP50754	Barley	plastid	91.17	56.27
CAA33995	Rice	plasma membrane	90.07	55.59
TraesCS1D01G181100.1	Wheat	golgi, mitochondrion, peroxisome, plasma membrane	89.4	55.25
ATCG00340.1	Thale cress	golgi, mitochondrion, plasma membrane, plastid	86.98	53.68
HORVU2Hr1G022470.1	Barley	cytosol, plastid	5.96	51.92
Solyc12g032990.1.1	Tomato	plastid	15.23	38.12
HORVU4Hr1G045310.1	Barley	extracellular	29.36	36.54
HORVU4Hr1G045260.1	Barley	cytosol	10.6	35.04
HORVU4Hr1G045300.1	Barley	cytosol	35.76	28.88
HORVU3Hr1G004680.1	Barley	cytosol, plasma membrane, plastid	21.85	22.35
HORVU6Hr1G049200.2	Barley	cytosol, plasma membrane, plastid	34.44	20.8
AGP50755	Barley	plastid	34.44	20.8
HORVU5Hr1G064640.2	Barley	cytosol, plasma membrane, plastid	34.22	20.67
HORVU6Hr1G037020.1	Barley	plastid	2.21	4.55
GSMUA_AchrUn_...	Banana	cytosol, golgi	38.85	3.36
HORVU0Hr1G034550.1	Barley	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	UniProt:A0A287JZM9	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009522	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:HORVU3Hr1G004700	EnsemblPlants:HORVU3Hr1G004700.1	InterPro:IPR036408	PFAM:PF00223
PRINTS:PR00257	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF4	SUPFAM:SSF81558
TMHMM:TMhelix	UniParc:UPI000B487725	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:11858188..11860391

Molecular Weight (calculated)

49975.8 Da

IEP (calculated)

7.676

GRAVY (calculated)

0.090

Length

453 amino acids

Sequence
(BLAST)

001: MDVRKSVSCS LARKFGIMDT GSFTRKTYCS CDLGSHFGQP AVEAFTRGGA AGPVNIAYSG VYQWWYTIGL RTNEDLYTGA LFLLFLSTLS LIAGWLHLQP
101: KWKPSLSWFK NAESRLNHHL SGLFGVSSLA WTGHLVHVAI PASRGEYVRW NNLLDVLPYP QGLGPLLTGQ WNLYAQNPDS SNHLFGTAQG AGTAILTLLG
201: GFHPQTQSLW LTDMAHHHLA IAFIFLIAGH MYRTNFGIGH SIKDLLEAHT SPGGRLGRGH KGLYDTINNS IHFQLGLALA SLGVITSLVA QHMYSLPPYA
301: FIAQDFTTQA ALYTHHQYIA GFIMTGAFAH GAIFSIRDYN PEQNEDNVLA RMLDHKEAII SHLSWASLFL GFHTLGLYVH NDVMLAFGTP EKQILIEPIF
401: AQWIQSAHGK TTYGFDILLS STNGPTFNAG RSLWLPGWLN AVNENSSSLF LTI

Best Arabidopsis Sequence Match ( ATCG00340.1 )
(BLAST)

001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG

Arabidopsis Description

PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.