Factsheet for HORVU0Hr1G034550.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g020960.1.1	Tomato	plastid	58.82	28.27
Solyc10g017890.1.1	Tomato	nucleus	62.5	27.07
HORVU5Hr1G064630.2	Barley	plastid	0.0	0.0
Solyc10g017900.1.1	Tomato	extracellular, golgi, plasma membrane	0.0	0.0
Solyc09g059640.1.1	Tomato	cytosol	0.0	0.0
Solyc05g020010.1.1	Tomato	nucleus	0.0	0.0
OQU79261	Sorghum	plastid	0.0	0.0
HORVU6Hr1G049200.2	Barley	cytosol, plasma membrane, plastid	0.0	0.0
HORVU6Hr1G049190.1	Barley	golgi, mitochondrion, peroxisome, plasma membrane	0.0	0.0
HORVU6Hr1G037020.1	Barley	plastid	0.0	0.0
HORVU5Hr1G064640.2	Barley	cytosol, plasma membrane, plastid	0.0	0.0
AGP50754	Barley	plastid	0.0	0.0
HORVU4Hr1G045310.1	Barley	extracellular	0.0	0.0
HORVU4Hr1G045300.1	Barley	cytosol	0.0	0.0
HORVU4Hr1G045260.1	Barley	cytosol	0.0	0.0
HORVU3Hr1G004700.1	Barley	plastid	0.0	0.0
HORVU3Hr1G004680.1	Barley	cytosol, plasma membrane, plastid	0.0	0.0
HORVU2Hr1G022470.1	Barley	cytosol, plastid	0.0	0.0
HORVU1Hr1G038010.4	Barley	plastid	0.0	0.0
HORVU0Hr1G029730.1	Barley	endoplasmic reticulum	0.0	0.0
AGP50755	Barley	plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	UniProt:A0A287EBD1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009522	GO:GO:0009579
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:HORVU0Hr1G034550
EnsemblPlants:HORVU0Hr1G034550.1	InterPro:IPR036408	PFAM:PF00223	InterPro:PSI_PsaA	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf
PANTHER:PTHR30128	PANTHER:PTHR30128:SF8	SUPFAM:SSF81558	UniParc:UPI000B46319B	:	:

Description

No Description!

Coordinates

chrchrUn:-:205991062..205991745

Molecular Weight (calculated)

15334.9 Da

IEP (calculated)

5.157

GRAVY (calculated)

-0.286

Length

136 amino acids

Sequence
(BLAST)

001: MIIRSPEPEV KIVVDRDPVK TSFEEWARPG HFSRTLAKGP DTTTWIWNLH ADAHDFDSHT GDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG VSEESK

Best Arabidopsis Sequence Match ( AT1G20410.2 )
(BLAST)

001: MENERALLSY LKGKYSTEVW LQRDKISVKD ALKVLLLDQL KASLGAESDS SSFHIRLTYT KASDEAQGAS ETTHESKRRK TDAENGSNCI SENSFEKVYE
101: PCIFSVHCNR MPIFFSGRYF KYSRNVSQSR WIIDDERMGE ASVEEILGGN ILPACLGDSY KFHAAGREDI DVRMLGSGRP FLIEVQNSRQ LPSEQSLKEV
201: EEKINKSEKK LVGVKDLKCI GSQCWAMMRE GEAEKQKQYV ALVWISRPLE EKDFNSISCL KELKILQKTP VRVLHRRSPL DREKIIHWMK VEKIKGHSHY
301: FLLHLCTQAG TYIKEFVHGD LGRTTPSMGS ILGCRAEIIQ LDVTDVKMGD P

Arabidopsis Description

Pseudouridine synthase family protein [Source:UniProtKB/TrEMBL;Acc:F4HSS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.