Factsheet for Solyc10g017890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g015300.1.1	Tomato	cytosol	24.52	65.25
HORVU0Hr1G034550.1	Barley	cytosol	27.07	62.5
Solyc02g020960.1.1	Tomato	plastid	51.59	57.24
Solyc09g018800.1.1	Tomato	cytosol	14.97	49.47
Solyc09g015340.1.1	Tomato	golgi	21.97	33.5
Solyc12g062600.1.1	Tomato	cytosol, nucleus, plastid	3.5	11.11
Solyc01g017320.1.1	Tomato	cytosol, golgi, mitochondrion, plastid	2.23	10.29
Solyc12g033040.1.1	Tomato	cytosol	5.1	8.65
Solyc09g015320.1.1	Tomato	cytosol	5.41	7.39
Solyc01g017330.1.1	Tomato	extracellular	3.18	7.25
Solyc07g021240.1.1	Tomato	cytoskeleton, cytosol, plastid	3.82	7.1
Solyc12g035740.1.1	Tomato	cytosol, mitochondrion, plastid	3.18	6.76
Solyc01g017310.1.1	Tomato	mitochondrion	1.27	5.41
Solyc12g033060.1.1	Tomato	plastid	4.46	5.13
Solyc01g018090.1.1	Tomato	mitochondrion	1.59	5.05
Solyc12g032990.1.1	Tomato	plastid	2.55	4.42
Solyc06g009940.1.1	Tomato	nucleus	0.96	4.17
Solyc12g032980.1.1	Tomato	nucleus	1.27	3.05
Solyc09g059640.1.1	Tomato	cytosol	0.96	2.68
Solyc12g033050.1.1	Tomato	plastid	1.59	2.53
Solyc10g052740.1.1	Tomato	nucleus	0.96	2.22
Solyc01g017300.1.1	Tomato	plastid	1.59	1.8
Solyc05g020010.1.1	Tomato	nucleus	0.32	0.64
Solyc10g017900.1.1	Tomato	extracellular, golgi, plasma membrane	0.0	0.0
OQU79261	Sorghum	plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009522	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR036408	UniProt:K4CYR3
PFAM:PF00223	InterPro:PSI_PsaA	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF8
SUPFAM:SSF81558	EnsemblPlantsGene:Solyc10g017890.1	EnsemblPlants:Solyc10g017890.1.1	TMHMM:TMhelix	UniParc:UPI000276C571	SEG:seg

Description

No Description!

Coordinates

chr10:+:6175774..6178663

Molecular Weight (calculated)

35960.4 Da

IEP (calculated)

7.114

GRAVY (calculated)

0.058

Length

314 amino acids

Sequence
(BLAST)

001: MQALEYYFRA LERNPFLPQM IIRSQEPEVK ILVDRYPLKT SFEEWARPGH FSRTIAKGPD TTIWVWNLHA DAHDFDSRTS DLEEISQKVF SAHFGELSVI
101: FLWLSGMYFH DASFSNYELW RASGITSELQ LCCTTIGALV FAALMLFAGW FHYRKAALKL AWFQNVESML NHHLVGLLGL GVSLFGGASN PKDIVHHYLA
201: IAILFLIAGH MYRTDWGIGH GLKDILESHK GPFTGQGHKA HHIYFMPPYP YLATDYGTQL SLFTHHMWIG GFLIVGAAAH ATIFMVRYYD PTTQYIDLLD
301: RVLRHRDAII SHLN

Best Arabidopsis Sequence Match ( ATCG00350.1 )
(BLAST)

001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG

Arabidopsis Description

PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.