Factsheet for Solyc09g059640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g032980.1.1	Tomato	nucleus	51.79	44.27
Solyc01g017320.1.1	Tomato	cytosol, golgi, mitochondrion, plastid	11.61	19.12
Solyc12g035740.1.1	Tomato	cytosol, mitochondrion, plastid	15.18	11.49
Solyc12g033060.1.1	Tomato	plastid	17.86	7.33
Solyc02g020960.1.1	Tomato	plastid	10.71	4.24
Solyc12g062600.1.1	Tomato	cytosol, nucleus, plastid	2.68	3.03
Solyc06g009940.1.1	Tomato	nucleus	1.79	2.78
Solyc07g021240.1.1	Tomato	cytoskeleton, cytosol, plastid	2.68	1.78
Solyc10g017890.1.1	Tomato	nucleus	2.68	0.96
Solyc01g017330.1.1	Tomato	extracellular	0.89	0.72
Solyc09g015320.1.1	Tomato	cytosol	0.0	0.0
Solyc12g033050.1.1	Tomato	plastid	0.0	0.0
Solyc12g033040.1.1	Tomato	cytosol	0.0	0.0
Solyc12g032990.1.1	Tomato	plastid	0.0	0.0
Solyc10g052740.1.1	Tomato	nucleus	0.0	0.0
Solyc10g017900.1.1	Tomato	extracellular, golgi, plasma membrane	0.0	0.0
Solyc09g018800.1.1	Tomato	cytosol	0.0	0.0
Solyc09g015340.1.1	Tomato	golgi	0.0	0.0
HORVU0Hr1G034550.1	Barley	cytosol	0.0	0.0
Solyc09g015300.1.1	Tomato	cytosol	0.0	0.0
Solyc05g020010.1.1	Tomato	nucleus	0.0	0.0
Solyc01g018090.1.1	Tomato	mitochondrion	0.0	0.0
Solyc01g017310.1.1	Tomato	mitochondrion	0.0	0.0
Solyc01g017300.1.1	Tomato	plastid	0.0	0.0
OQU79261	Sorghum	plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009522	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	InterPro:IPR036408	UniProt:K4CTP8	PFAM:PF00223	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf
PANTHER:PTHR30128	PANTHER:PTHR30128:SF4	SUPFAM:SSF81558	EnsemblPlantsGene:Solyc09g059640.1	EnsemblPlants:Solyc09g059640.1.1	TMHMM:TMhelix
UniParc:UPI000276B75C	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:54977338..54978364

Molecular Weight (calculated)

12494.0 Da

IEP (calculated)

6.894

GRAVY (calculated)

0.180

Length

112 amino acids

Sequence
(BLAST)

001: MLSAAPGQWN LYAQNPDSSS HLFGTAEGAG TTILTLLGGF HPQTQSLRLT DIAHYHLAIV FIFLVAGHMY RTNFWIGHNM KDILNAHIPP GDDWGVDIRV
101: FVIQSSIRFI FN

Best Arabidopsis Sequence Match ( ATCG00340.1 )
(BLAST)

001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG

Arabidopsis Description

PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.