Factsheet for Solyc12g033060.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plastid

plastid: 20363867
plastid: 22908117
plastid: 25431925
plastid: 26371478

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25431925 doi

S Muneer, YG Park, A Manivannan, P Soundararajan, BR Jeong

Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. abinayamanivannan@gmail.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. brjeong@gmail.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. iuyiuy09@naver.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. prabhakaran.s.bioinfo@gmail.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. sobiyakhan126@gmail.com.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g106090.2.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00340.1	Solyc01g106090.2.1	AT4G15510.1	23221595
ATCG00340.1	Solyc01g106090.2.1	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g062600.1.1	Tomato	cytosol, nucleus, plastid	28.94	79.8
Solyc12g032990.1.1	Tomato	plastid	51.65	77.9
Solyc07g021240.1.1	Tomato	cytoskeleton, cytosol, plastid	40.66	65.68
Solyc01g017320.1.1	Tomato	cytosol, golgi, mitochondrion, plastid	13.19	52.94
Solyc12g035740.1.1	Tomato	cytosol, mitochondrion, plastid	27.84	51.35
ATCG00340.1	Thale cress	golgi, mitochondrion, plasma membrane, plastid	90.11	33.52
Solyc12g033040.1.1	Tomato	cytosol	22.71	33.51
Solyc01g017330.1.1	Tomato	extracellular	16.12	31.88
Solyc05g020010.1.1	Tomato	nucleus	17.58	30.57
Solyc10g017900.1.1	Tomato	extracellular, golgi, plasma membrane	13.55	26.24
CDY39485	Canola	mitochondrion, plastid	59.34	23.89
Solyc09g059640.1.1	Tomato	cytosol	7.33	17.86
Solyc12g032980.1.1	Tomato	nucleus	7.33	15.27
Solyc12g033050.1.1	Tomato	plastid	5.13	7.07
Solyc10g017890.1.1	Tomato	nucleus	5.13	4.46
Solyc02g020960.1.1	Tomato	plastid	1.83	1.77
Solyc09g015300.1.1	Tomato	cytosol	0.0	0.0
Solyc09g015320.1.1	Tomato	cytosol	0.0	0.0
Solyc09g015340.1.1	Tomato	golgi	0.0	0.0
Solyc09g018800.1.1	Tomato	cytosol	0.0	0.0
Solyc06g009940.1.1	Tomato	nucleus	0.0	0.0
Solyc10g052740.1.1	Tomato	nucleus	0.0	0.0
Solyc01g018090.1.1	Tomato	mitochondrion	0.0	0.0
Solyc01g017310.1.1	Tomato	mitochondrion	0.0	0.0
Solyc01g017300.1.1	Tomato	plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009522	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0016491	GO:GO:0018298	GO:GO:0019538	GO:GO:0022900	GO:GO:0046872
GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	InterPro:IPR036408	UniProt:K4DDX4	PFAM:PF00223
ScanProsite:PS00419	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_CS	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF4
SUPFAM:SSF81558	EnsemblPlantsGene:Solyc12g033060.1	EnsemblPlants:Solyc12g033060.1.1	TMHMM:TMhelix	UniParc:UPI0002769CFD	:

Description

No Description!

Coordinates

chr12:-:60948729..60949644

Molecular Weight (calculated)

30717.1 Da

IEP (calculated)

7.078

GRAVY (calculated)

0.163

Length

273 amino acids

Sequence
(BLAST)

001: MYRTNFGIGN SMKDLLDAHI PLGGRLGYGH KGLYETINNS LHFQLGLDLA SLGVITSFVA QHMYSLPAYA FITQEFTTQA ALYTHHQYIA GFIMIGAFAH
101: GAIFFIRDYN PEQNKDNVLA RMLDHREAII SHLSWASLFL GFHTLGLYVH SDFMLACGTP EKKILIEPIF SQWIQSANGP GDFLDHHAIA LGLHTTTLIL
201: VKGALDARGS KLMLDKKDFS YSFLCDGPGR GGTCDILAWD AFYLAVFWML NTIGWVTFYW HWKQITLWKG NVS

Best Arabidopsis Sequence Match ( ATCG00340.1 )
(BLAST)

001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG

Arabidopsis Description

PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.