Factsheet for Solyc02g020960.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 26371478

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g015300.1.1	Tomato	cytosol	26.86	64.41
Solyc09g018800.1.1	Tomato	cytosol	19.79	58.95
HORVU0Hr1G034550.1	Barley	cytosol	28.27	58.82
Solyc10g017890.1.1	Tomato	nucleus	57.24	51.59
Solyc09g015340.1.1	Tomato	golgi	26.5	36.41
Solyc06g009940.1.1	Tomato	nucleus	2.83	11.11
Solyc01g017310.1.1	Tomato	mitochondrion	2.83	10.81
Solyc09g059640.1.1	Tomato	cytosol	4.24	10.71
Solyc12g032980.1.1	Tomato	nucleus	4.95	10.69
Solyc12g062600.1.1	Tomato	cytosol, nucleus, plastid	2.47	7.07
Solyc09g015320.1.1	Tomato	cytosol	5.65	6.96
Solyc01g018090.1.1	Tomato	mitochondrion	1.41	4.04
Solyc01g017330.1.1	Tomato	extracellular	1.77	3.62
Solyc07g021240.1.1	Tomato	cytoskeleton, cytosol, plastid	2.12	3.55
Solyc12g033050.1.1	Tomato	plastid	1.77	2.53
Solyc01g017300.1.1	Tomato	plastid	2.47	2.52
Solyc12g035740.1.1	Tomato	cytosol, mitochondrion, plastid	1.06	2.03
Solyc12g033060.1.1	Tomato	plastid	1.77	1.83
Solyc10g052740.1.1	Tomato	nucleus	0.71	1.48
Solyc01g017320.1.1	Tomato	cytosol, golgi, mitochondrion, plastid	0.35	1.47
Solyc12g032990.1.1	Tomato	plastid	0.71	1.1
Solyc12g033040.1.1	Tomato	cytosol	0.35	0.54
Solyc05g020010.1.1	Tomato	nucleus	0.0	0.0
Solyc10g017900.1.1	Tomato	extracellular, golgi, plasma membrane	0.0	0.0
OQU79261	Sorghum	plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009522	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0016491	GO:GO:0018298	GO:GO:0019538	GO:GO:0022900	GO:GO:0046872
GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	InterPro:IPR036408	UniProt:K4B4U6	PFAM:PF00223
InterPro:PSI_PsaA	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF8	SUPFAM:SSF81558
EnsemblPlantsGene:Solyc02g020960.1	EnsemblPlants:Solyc02g020960.1.1	UniParc:UPI0002768632	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:20737041..20738516

Molecular Weight (calculated)

32020.2 Da

IEP (calculated)

6.624

GRAVY (calculated)

0.096

Length

283 amino acids

Sequence
(BLAST)

001: MGTIAHDQWK IILEHTDPKT SFEEWARPGQ FSRTIAKGPD TTTWIWNLHV DAHNFDSHTS YLEELSQKVF SAHFGQLSTI FLWLSTMYFH GARFSNYEVL
101: ISDPTHIGPS VWRASGITSE LQLNCTTIGS LVFADLMLFA GWFHYHKAAP KLALFQDVES MLNHHLTGLL GLGSLSWAGH HFCRGSNPIF TLNRSKYADF
201: LTFREGLDPV IGGLWLTDIA HQHLDITILF LIANQGHKGL YEILTTSWHS TDCGTQLSLF THHMWIGEFL IVCVPAHAAI FIV

Best Arabidopsis Sequence Match ( ATCG00350.1 )
(BLAST)

001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG

Arabidopsis Description

PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.