Factsheet for Solyc12g032980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g106090.2.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00340.1	Solyc01g106090.2.1	AT4G15510.1	23221595
ATCG00340.1	Solyc01g106090.2.1	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g059640.1.1	Tomato	cytosol	44.27	51.79
HORVU3Hr1G004700.1	Barley	plastid	82.44	23.84
Solyc01g017310.1.1	Tomato	mitochondrion	12.21	21.62
Solyc06g009940.1.1	Tomato	nucleus	10.69	19.44
Solyc12g033050.1.1	Tomato	plastid	29.01	19.19
Solyc01g017320.1.1	Tomato	cytosol, golgi, mitochondrion, plastid	9.16	17.65
Solyc01g018090.1.1	Tomato	mitochondrion	11.45	15.15
TraesCS1D01G181100.1	Wheat	golgi, mitochondrion, peroxisome, plasma membrane	83.21	14.87
AGP50754	Barley	plastid	82.44	14.71
CAA33995	Rice	plasma membrane	82.44	14.71
HORVU6Hr1G049190.1	Barley	golgi, mitochondrion, peroxisome, plasma membrane	82.44	14.71
TraesCS2B01G487400.1	Wheat	plastid	81.68	14.58
ATCG00340.1	Thale cress	golgi, mitochondrion, plasma membrane, plastid	80.92	14.44
HORVU1Hr1G038010.4	Barley	plastid	44.27	13.33
HORVU5Hr1G064630.2	Barley	plastid	45.8	12.9
Solyc12g035740.1.1	Tomato	cytosol, mitochondrion, plastid	13.74	12.16
HORVU4Hr1G045300.1	Barley	cytosol	34.35	8.02
Solyc10g052740.1.1	Tomato	nucleus	7.63	7.41
Solyc12g033060.1.1	Tomato	plastid	15.27	7.33
Solyc02g020960.1.1	Tomato	plastid	10.69	4.95
GSMUA_AchrUn_...	Banana	cytosol, golgi	70.99	1.78
Solyc10g017890.1.1	Tomato	nucleus	3.05	1.27
Solyc09g018800.1.1	Tomato	cytosol	0.0	0.0
Solyc09g015340.1.1	Tomato	golgi	0.0	0.0
Solyc10g017900.1.1	Tomato	extracellular, golgi, plasma membrane	0.0	0.0
Solyc09g015320.1.1	Tomato	cytosol	0.0	0.0
Solyc12g032990.1.1	Tomato	plastid	0.0	0.0
Solyc12g033040.1.1	Tomato	cytosol	0.0	0.0
Solyc09g015300.1.1	Tomato	cytosol	0.0	0.0
Solyc07g021240.1.1	Tomato	cytoskeleton, cytosol, plastid	0.0	0.0
Solyc01g017300.1.1	Tomato	plastid	0.0	0.0
Solyc12g062600.1.1	Tomato	cytosol, nucleus, plastid	0.0	0.0
Solyc05g020010.1.1	Tomato	nucleus	0.0	0.0
Solyc01g017330.1.1	Tomato	extracellular	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009522	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	InterPro:IPR036408	UniProt:K4DDW6	PFAM:PF00223	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf
PANTHER:PTHR30128	PANTHER:PTHR30128:SF4	SUPFAM:SSF81558	EnsemblPlantsGene:Solyc12g032980.1	EnsemblPlants:Solyc12g032980.1.1	UniParc:UPI0002769CF5

Description

No Description!

Coordinates

chr12:-:61004198..61004698

Molecular Weight (calculated)

14574.6 Da

IEP (calculated)

10.035

GRAVY (calculated)

0.173

Length

131 amino acids

Sequence
(BLAST)

001: MSLIAGWLHL QPKWKPSVSW FKNVESRLNH RFSGLFGVSS LAWTGHLVHV AIPASRADSQ LFGTAEGAGT AILTLLWGFH SQTQCLWLND IAHRHLAIAF
101: IFLFAGHMYR TNFGIGHNMK DLFDAHIPPG G

Best Arabidopsis Sequence Match ( ATCG00340.1 )
(BLAST)

001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG

Arabidopsis Description

PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.