Factsheet for TraesCS2B01G487400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plastid

plastid: 22056444
plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 22056444 doi

Q Meng, L Rao, X Xiang, C Zhou, X Zhang, Y Pan

College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G087200.1	plastid
TraesCS5B01G093100.1	plastid
TraesCS5D01G099000.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00340.1	TraesCS5A01G087200.1	AT4G15510.1	23221595
ATCG00340.1	TraesCS5B01G093100.1	AT4G15510.1	23221595
ATCG00340.1	TraesCS5D01G099000.1	AT4G15510.1	23221595
ATCG00340.1	TraesCS5A01G087200.1	AT4G15510.1	23221595
ATCG00340.1	TraesCS5B01G093100.1	AT4G15510.1	23221595
ATCG00340.1	TraesCS5D01G099000.1	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CAA33995	Rice	plasma membrane	98.37	98.37
TraesCS1D01G181100.1	Wheat	golgi, mitochondrion, peroxisome, plasma membrane	97.14	97.27
ATCG00340.1	Thale cress	golgi, mitochondrion, plasma membrane, plastid	96.05	96.05
HORVU5Hr1G064630.2	Barley	plastid	56.68	89.46
Solyc12g032990.1.1	Tomato	plastid	21.12	85.64
KRH37800	Soybean	endoplasmic reticulum, plasma membrane	21.12	83.78
Solyc12g032980.1.1	Tomato	nucleus	14.58	81.68
VIT_18s0001g08620.t01	Wine grape	cytosol	22.34	66.67
CDY39485	Canola	mitochondrion, plastid	38.01	41.15
TraesCS6B01G234800.1	Wheat	cytosol, plasma membrane, plastid	28.34	37.82
TraesCS1B01G163900.1	Wheat	cytosol, plasma membrane, plastid	27.79	37.16
TraesCS1B01G163800.1	Wheat	cytosol, plasma membrane, plastid	26.7	35.7
TraesCS6B01G208100.1	Wheat	golgi, plasma membrane, plastid	32.02	35.44
TraesCS1B01G189100.1	Wheat	cytosol, plasma membrane, plastid	8.99	35.29
TraesCS3B01G185500.1	Wheat	plastid	35.15	34.4
GSMUA_AchrUn_...	Banana	cytosol, golgi	33.52	4.7

Protein Annotations

MapMan:1.1.4.2.2	Gene3D:1.20.1130.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009522	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	InterPro:IPR036408	HAMAP:MF_00482	PFAM:PF00223	PIRSF:PIRSF002905	PRINTS:PR00257
ScanProsite:PS00419	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_CS	InterPro:PSI_PsaA/B_sf	InterPro:PSI_PsaB	PANTHER:PTHR30128
PANTHER:PTHR30128:SF4	SUPFAM:SSF81558	TIGRFAMs:TIGR01336	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2B01G487400	EnsemblPlants:TraesCS2B01G487400.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:683731820..683734978

Molecular Weight (calculated)

82743.0 Da

IEP (calculated)

7.161

GRAVY (calculated)

0.097

Length

734 amino acids

Sequence
(BLAST)

001: MESRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFESWIQD PLHVRPIAHT IWDPHFGQPA
101: VEAFTRGGAA GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSMLSL ITGWLHLQPK WKPSLSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLDVLPYPQ GLGPLLTGQW NLYAQNPDSS NHLFGTAQGA GTAILTLLCG FHPQTQSLWL TDMAHHHLAI AFIFLIAGHM YRTNFGIGHS
301: IKDFLEAHTP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPPYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KHILIEPIFA QWIQSAHGKT TYGFDILLSS TNGPAFNAGR SLWLPGWLNA
501: VNENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWRDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG

Best Arabidopsis Sequence Match ( ATCG00340.1 )
(BLAST)

001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG

Arabidopsis Description

PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [plastid,golgi,plasma membrane,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.