Factsheet for GSMUA_AchrUn_randomP21780_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P12740_001	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00340.1	GSMUA_Achr3P12740_001	AT4G15510.1	23221595
ATCG00340.1	GSMUA_Achr3P12740_001	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g032980.1.1	Tomato	nucleus	1.78	70.99
HORVU4Hr1G045300.1	Barley	cytosol	5.7	53.12
KRH37800	Soybean	endoplasmic reticulum, plasma membrane	1.68	47.57
HORVU3Hr1G004700.1	Barley	plastid	3.36	38.85
ATCG00340.1	Thale cress	golgi, mitochondrion, plasma membrane, plastid	4.78	34.06
CAA33995	Rice	plasma membrane	4.78	34.06
AGP50754	Barley	plastid	4.76	33.92
HORVU6Hr1G049190.1	Barley	golgi, mitochondrion, peroxisome, plasma membrane	4.76	33.92
TraesCS1D01G181100.1	Wheat	golgi, mitochondrion, peroxisome, plasma membrane	4.72	33.7
TraesCS2B01G487400.1	Wheat	plastid	4.7	33.52
HORVU1Hr1G038010.4	Barley	plastid	2.39	28.74
HORVU5Hr1G064630.2	Barley	plastid	2.45	27.53
VIT_18s0001g08620.t01	Wine grape	cytosol	1.19	25.2
Solyc12g032990.1.1	Tomato	plastid	0.25	7.18
CDY39485	Canola	mitochondrion, plastid	0.46	3.54
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	0.04	0.75

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.20.1130.10	Gene3D:3.90.1100.10	Gene3D:3.90.1110.10	MapMan:35.1
ncoils:Coil	GO:GO:0000287	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006139	GO:GO:0006351	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009058	GO:GO:0009507	GO:GO:0009522	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0016491	GO:GO:0016740	GO:GO:0016779	GO:GO:0018298	GO:GO:0019538	GO:GO:0022900
GO:GO:0032549	GO:GO:0046872	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	EnsemblPlantsGene:GSMUA_AchrUn_randomG21780_001
EnsemblPlants:GSMUA_AchrUn_randomP21780_001	EnsemblPlants:GSMUA_AchrUn_randomT21780_001	InterPro:IPR036408	InterPro:IPR037034	UniProt:M0UB86	PFAM:PF00223
PFAM:PF04561	PFAM:PF04563	PFAM:PF04565	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128
PANTHER:PTHR30128:SF4	InterPro:RNA_pol_Rpb2_2	InterPro:RNA_pol_Rpb2_2_sf	InterPro:RNA_pol_Rpb2_3	InterPro:RNA_pol_bsu_protrusion	SUPFAM:SSF64484
SUPFAM:SSF81558	UniParc:UPI000296F91B	SEG:seg	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG21780_001]

Coordinates

chrchrUn_random:-:106314457..106330543

Molecular Weight (calculated)

94430.6 Da

IEP (calculated)

8.312

GRAVY (calculated)

-0.019

Length

5232 amino acids

Sequence
(BLAST)

0001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFESWIQD PLHVRPIAHA IWDPHFGQPA
0101: VEAFTRGAGW LHLQPKWKPS VSWFKNAESR LNHHLSGLFG VSSLAWTGHL VHVAIPGSRG QYVRWNNFLD VLPYPQGLGP LFTGTAILTL LGGFHPQTQS
0201: LWLTDIAHHH LAIAFIFLIA GHMYRTNFGI GHSIKDLLET HIPPGGRLGR GHKGLYDTIN NSLHFQLGLA LASLGVITSL VAQHMYSLPA YAFIAQDFTT
0301: QAALYTHHQY IAXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0401: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0601: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0701: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0801: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0901: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1201: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1301: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1401: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1601: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1701: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1801: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1901: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
2001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
2101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
2201: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
2301: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
2401: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
2501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
2601: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
2701: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
2801: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
2901: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
3001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
3101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
3201: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
3301: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
3401: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
3501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
3601: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
3701: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
3801: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
3901: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
4001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
4101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
4201: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
4301: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
4401: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
4501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
4601: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
4701: XXXXXXXXXS NLRRKCSSFL CLISVHTYEI HIWYMELAKI SCDSVNRIYI PSLLDRSMLR NDGNEGMSTI PGFSQIQFEG FCRFINEGLT EEFHKFPKIE
4801: DTDQEIEFKL FVERYQLVEP LINERDAVYE SLTYSSELYV PAGLIWKTGR DMQEQTVFIG NIPLMNSLGT FIVNGIYRIV INQILQSPGI YYRSELDHNG
4901: ISVYTSTIIS DWGGRSELEI DRKARIWARV SRKQKISILI LSSAMGSNLR EILDNVCYPE IFLSFPNDKE KKKIGSKENA ILEFYQQFAC VGGDPVFSES
5001: LCKELQKKFF QQRCELGRIG RRNMNRRLNL DIPQNNTFLL PRDVLAAADH LIGIKFGMGT LDDMNHLKNK RIRSIADLLQ DQFGLALVRL ENAVRGTICG
5101: AIRHKLIPTP QNLVTSTSLT TTYESFFGLH PLSQVLDRTN PLTQIVHGRK LSYLGPGGLT GRTASFRIRD IHPSHYGRIC PIDTSEGINV GLIGSLAIHV
5201: RIGHWGSIER RTGCSSPIPS RVPDYCMGTD SS

Best Arabidopsis Sequence Match ( ATCG00190.1 )
(BLAST)

0001: MLGDEKEGTS AIPGFNQIQF EGFYRFIDQG LIEELAKFPK IEDIDHEIEF QLFVETYQLV EPLIKERDAV YESLTYSSEL YVSAGLIWKT SRNMQEQRIF
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV

Arabidopsis Description

RPOBDNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.