Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 4
- plastid 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc12g033060.1.1 | Tomato | plastid | 23.89 | 59.34 |
CDX99952 | Canola | cytosol, endoplasmic reticulum, vacuole | 58.41 | 58.75 |
CDY15768 | Canola | cytosol, endoplasmic reticulum, vacuole | 58.41 | 58.75 |
CDY29456 | Canola | cytosol, endoplasmic reticulum, vacuole | 58.41 | 58.75 |
VIT_18s0001g08620.t01 | Wine grape | cytosol | 15.63 | 43.09 |
KRH37800 | Soybean | endoplasmic reticulum, plasma membrane | 10.47 | 38.38 |
TraesCS2B01G487400.1 | Wheat | plastid | 41.15 | 38.01 |
CAA33995 | Rice | plasma membrane | 41.15 | 38.01 |
HORVU0Hr1G029730.1 | Barley | endoplasmic reticulum | 7.23 | 37.98 |
TraesCS1D01G181100.1 | Wheat | golgi, mitochondrion, peroxisome, plasma membrane | 40.27 | 37.24 |
CDY67706 | Canola | plasma membrane, vacuole | 18.73 | 21.86 |
CDY29455 | Canola | cytosol, plasma membrane, plastid | 20.35 | 18.4 |
CDY15767 | Canola | cytosol, plasma membrane, plastid | 20.35 | 18.4 |
CDX99951 | Canola | cytosol, plasma membrane, plastid | 20.35 | 18.4 |
CDX80066 | Canola | cytosol, plasma membrane, plastid | 20.35 | 18.4 |
CDY43223 | Canola | extracellular | 2.51 | 11.33 |
GSMUA_AchrUn_... | Banana | cytosol, golgi | 3.54 | 0.46 |
CDY67707 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
Description
BnaC03g60950DBnaC03g60950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HM06]
Coordinates
chrLK032448:+:294198..297047
Molecular Weight (calculated)
76477.2 Da
IEP (calculated)
9.949
GRAVY (calculated)
-0.310
Length
678 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLPSFHLHF RKFLSFLLRL SSKSVGYILL STGPKVIQKG RTSPELKIEE YPILWNSRKL QPYQEKLLQS PVYLKISRNN LLSTGSYLSM RENSNMVLFP
101: EYKKAKEQHK NHNMPRRNDL NQARNVIKEF EHPSIQGRTM YSSVIGGSNE EGTWRSTDSA ANTDGPATMS DLHSLIQAFI SSKKAGTHSL DPKPIIIDSG
201: ASHHMISDRN LMSDVQPASG NVQIANGDKI KIEGIGNLRL FDRESTALYM PQFTSNLLSV RKATVDLSCQ VVFRPDEVEF QDLKTCQVIG KGHVHNELYH
301: LQKTEMSRPS TLYTHHQYIA GFIMTGAFAH GAIFFIRDYN PEQNEDNVLA RMLDHKEAII SHLSWASLFL GFHTLGLYVH NDVMLAFGTP EKQILIEPIF
401: AQWIQSAHGK TSYGFDVLLS STNGPAFNAG RSIWLPGWLN AINENSNSLF LTIGPGDFLV HHAIALGLHT TTLILVKGAL DARGSKLMPD KKDFGYSFPC
501: DGPGRGGTCD ISAWDAFYLA ELIETLAWAH ERTPLANLIR WKDKPVALSI VQARLVGLAH FSDPICIIII DNKRNLSIMA KKSLIYREKK RQKLEQKYHL
601: IRRSLKKEIS EIPSLSEKWK IHGKLQSPPR NSAPTRLHRR CFSTGRPRAN YRDFGLSGHI LREMVQACLL PGATRSSW
101: EYKKAKEQHK NHNMPRRNDL NQARNVIKEF EHPSIQGRTM YSSVIGGSNE EGTWRSTDSA ANTDGPATMS DLHSLIQAFI SSKKAGTHSL DPKPIIIDSG
201: ASHHMISDRN LMSDVQPASG NVQIANGDKI KIEGIGNLRL FDRESTALYM PQFTSNLLSV RKATVDLSCQ VVFRPDEVEF QDLKTCQVIG KGHVHNELYH
301: LQKTEMSRPS TLYTHHQYIA GFIMTGAFAH GAIFFIRDYN PEQNEDNVLA RMLDHKEAII SHLSWASLFL GFHTLGLYVH NDVMLAFGTP EKQILIEPIF
401: AQWIQSAHGK TSYGFDVLLS STNGPAFNAG RSIWLPGWLN AINENSNSLF LTIGPGDFLV HHAIALGLHT TTLILVKGAL DARGSKLMPD KKDFGYSFPC
501: DGPGRGGTCD ISAWDAFYLA ELIETLAWAH ERTPLANLIR WKDKPVALSI VQARLVGLAH FSDPICIIII DNKRNLSIMA KKSLIYREKK RQKLEQKYHL
601: IRRSLKKEIS EIPSLSEKWK IHGKLQSPPR NSAPTRLHRR CFSTGRPRAN YRDFGLSGHI LREMVQACLL PGATRSSW
1: MAKKSLIYRE KKRQKLEKKY HLIRRSSKKE ISKIPSLSEK WKIHGKLQSP PRNSAPTRLH RRCFSTGRPR ANYRDFGLSG HILREMVQAC LLPGATRSSW
Arabidopsis Description
RPS1430S ribosomal protein S14, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.