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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • mitochondrion 4
  • plastid 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g033060.1.1 Tomato plastid 23.89 59.34
CDX99952 Canola cytosol, endoplasmic reticulum, vacuole 58.41 58.75
CDY15768 Canola cytosol, endoplasmic reticulum, vacuole 58.41 58.75
CDY29456 Canola cytosol, endoplasmic reticulum, vacuole 58.41 58.75
VIT_18s0001g08620.t01 Wine grape cytosol 15.63 43.09
KRH37800 Soybean endoplasmic reticulum, plasma membrane 10.47 38.38
TraesCS2B01G487400.1 Wheat plastid 41.15 38.01
CAA33995 Rice plasma membrane 41.15 38.01
HORVU0Hr1G029730.1 Barley endoplasmic reticulum 7.23 37.98
TraesCS1D01G181100.1 Wheat golgi, mitochondrion, peroxisome, plasma membrane 40.27 37.24
CDY67706 Canola plasma membrane, vacuole 18.73 21.86
CDY29455 Canola cytosol, plasma membrane, plastid 20.35 18.4
CDY15767 Canola cytosol, plasma membrane, plastid 20.35 18.4
CDX99951 Canola cytosol, plasma membrane, plastid 20.35 18.4
CDX80066 Canola cytosol, plasma membrane, plastid 20.35 18.4
CDY43223 Canola extracellular 2.51 11.33
GSMUA_AchrUn_... Banana cytosol, golgi 3.54 0.46
CDY67707 Canola cytosol 0.0 0.0
Protein Annotations
Gene3D:1.20.1130.10MapMan:17.7.2.2.14Gene3D:4.10.830.10GO:A0A078HM06UniProt:A0A078HM06EnsemblPlants:CDY39485
ProteinID:CDY39485ProteinID:CDY39485.1GO:GO:0000287GO:GO:0003674GO:GO:0003735GO:GO:0003824
GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005840GO:GO:0006091GO:GO:0006412GO:GO:0006464GO:GO:0008150GO:GO:0008152
GO:GO:0009055GO:GO:0009058GO:GO:0009507GO:GO:0009522GO:GO:0009536GO:GO:0009579
GO:GO:0009987GO:GO:0015979GO:GO:0016020GO:GO:0016021GO:GO:0016168GO:GO:0016491
GO:GO:0018298GO:GO:0019538GO:GO:0022900GO:GO:0042651GO:GO:0046872GO:GO:0051536
GO:GO:0051539GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00067982001InterPro:IPR036408HAMAP:MF_00537PFAM:PF00223
PFAM:PF00253PRINTS:PR00257ScanProsite:PS00419ScanProsite:PS00527InterPro:PSI_PsaA/BInterPro:PSI_PsaA/B_CS
InterPro:PSI_PsaA/B_sfPANTHER:PTHR30128PANTHER:PTHR30128:SF4MetaCyc:PWY-101InterPro:Ribosomal_S14InterPro:Ribosomal_S14_CS
InterPro:Ribosomal_S14_bac/plastidSUPFAM:SSF57716SUPFAM:SSF81558UniParc:UPI0004EEFF73SEG:seg:
Description
BnaC03g60950DBnaC03g60950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HM06]
Coordinates
chrLK032448:+:294198..297047
Molecular Weight (calculated)
76477.2 Da
IEP (calculated)
9.949
GRAVY (calculated)
-0.310
Length
678 amino acids
Sequence
(BLAST)
001: MSLPSFHLHF RKFLSFLLRL SSKSVGYILL STGPKVIQKG RTSPELKIEE YPILWNSRKL QPYQEKLLQS PVYLKISRNN LLSTGSYLSM RENSNMVLFP
101: EYKKAKEQHK NHNMPRRNDL NQARNVIKEF EHPSIQGRTM YSSVIGGSNE EGTWRSTDSA ANTDGPATMS DLHSLIQAFI SSKKAGTHSL DPKPIIIDSG
201: ASHHMISDRN LMSDVQPASG NVQIANGDKI KIEGIGNLRL FDRESTALYM PQFTSNLLSV RKATVDLSCQ VVFRPDEVEF QDLKTCQVIG KGHVHNELYH
301: LQKTEMSRPS TLYTHHQYIA GFIMTGAFAH GAIFFIRDYN PEQNEDNVLA RMLDHKEAII SHLSWASLFL GFHTLGLYVH NDVMLAFGTP EKQILIEPIF
401: AQWIQSAHGK TSYGFDVLLS STNGPAFNAG RSIWLPGWLN AINENSNSLF LTIGPGDFLV HHAIALGLHT TTLILVKGAL DARGSKLMPD KKDFGYSFPC
501: DGPGRGGTCD ISAWDAFYLA ELIETLAWAH ERTPLANLIR WKDKPVALSI VQARLVGLAH FSDPICIIII DNKRNLSIMA KKSLIYREKK RQKLEQKYHL
601: IRRSLKKEIS EIPSLSEKWK IHGKLQSPPR NSAPTRLHRR CFSTGRPRAN YRDFGLSGHI LREMVQACLL PGATRSSW
Best Arabidopsis Sequence Match ( ATCG00330.1 )
(BLAST)
1: MAKKSLIYRE KKRQKLEKKY HLIRRSSKKE ISKIPSLSEK WKIHGKLQSP PRNSAPTRLH RRCFSTGRPR ANYRDFGLSG HILREMVQAC LLPGATRSSW
Arabidopsis Description
RPS1430S ribosomal protein S14, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.