CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
endoplasmic reticulum 1
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22740	plastid
CDY22909	plastid
CDY54970	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00340.1	CDY22740	AT4G15510.1	23221595
ATCG00340.1	CDY22909	AT4G15510.1	23221595
ATCG00340.1	CDY54970	AT4G15510.1	23221595
ATCG00340.1	CDY22740	AT4G15510.1	23221595
ATCG00340.1	CDY22909	AT4G15510.1	23221595
ATCG00340.1	CDY54970	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99952	Canola	cytosol, endoplasmic reticulum, vacuole	100.0	100.0
CDY29456	Canola	cytosol, endoplasmic reticulum, vacuole	100.0	100.0
ATCG00340.1	Thale cress	golgi, mitochondrion, plasma membrane, plastid	80.71	74.11
CDY39485	Canola	mitochondrion, plastid	58.75	58.41
CDY43223	Canola	extracellular	10.53	47.33
CDY67706	Canola	plasma membrane, vacuole	29.82	34.6
CDX80066	Canola	cytosol, plasma membrane, plastid	31.6	28.4
CDX99951	Canola	cytosol, plasma membrane, plastid	31.6	28.4
CDY15767	Canola	cytosol, plasma membrane, plastid	31.6	28.4
CDY29455	Canola	cytosol, plasma membrane, plastid	31.6	28.4
CDY67707	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:17.7.2.2.14	Gene3D:4.10.830.10	GO:A0A078EFV5	UniProt:A0A078EFV5	EnsemblPlants:CDY15768
ProteinID:CDY15768	ProteinID:CDY15768.1	ProteinID:CDY29456.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009522	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00090030001	InterPro:IPR036408
HAMAP:MF_00537	PFAM:PF00223	PFAM:PF00253	PRINTS:PR00257	ScanProsite:PS00419	ScanProsite:PS00527
InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_CS	InterPro:PSI_PsaA/B_sf	InterPro:PSI_PsaB	PANTHER:PTHR30128	PANTHER:PTHR30128:SF4
MetaCyc:PWY-101	InterPro:Ribosomal_S14	InterPro:Ribosomal_S14_CS	InterPro:Ribosomal_S14_bac/plastid	SUPFAM:SSF57716	SUPFAM:SSF81558
TIGRFAMs:TIGR01336	TMHMM:TMhelix	UniParc:UPI0004EDAEAD	SEG:seg	:	:

Description

BnaC04g15560DBnaC04g15560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EFV5]

Coordinates

chrLK032057:+:435163..437734

Molecular Weight (calculated)

75254.1 Da

IEP (calculated)

9.867

GRAVY (calculated)

-0.013

Length

674 amino acids

Sequence
(BLAST)

001: MTSRVMMILL KNTWIQDPLH VRPIAHAIWD PHFGQPAVEA FTRGGALGPV NIAYSGVYQW WYTIGLRTNE DLYTGALFLL FLSALSLIGG WLHLQPKWKP
101: RVSWFKNAES RLNHHLSGLF GVSSLAWTGH LVHVAIPASR GEYVRWNNFL SVLPHPQGLG PLFTGQWNLY AQNPDSSSHL FGTSQGSGTA ILTLLGGFHP
201: QTQSLWLTDM AHHHLAIAIL FLIAGHMYRT NFGIGHSIKD LLEAHIPPGG RLGRGHKGLY DTINNSIHFQ LGLALASLGV ITSLVAQHMY SLPAYAFIAQ
301: DFTTQAALYT HHQYIAGFIM TGAFAHGAIF FIRDYNPEQN EDNVLARMLD HKEAIISHLS WASLFLGFHT LGLYVHNDVM LAFGTPEKQI LIEPIFAQWI
401: QSAHGKTSYG FDVLLSSTNG PAFNAGRSIW LPGWLNAINE NSNSLFLTIG PGDFLVHHAI ALGLHTTTLI LVKGALDARG SKLMPDKKDF GYSFPCDGPG
501: RGGTCDISAW DAFYLAELIE TLAWAHERTP LANLIRWKDK PVALSIVQAR LVGLAHFSDP ICIIIIDNKR NLSIMAKKSL IYREKKRQKL EQKYHLIRRS
601: LKKEISEIPS LSEKWKIHGK LQSPPRNSAP TRLHRRCFST GRPRANYRDF GLSGHILREM VQACLLPGAT RSSW

Best Arabidopsis Sequence Match ( ATCG00340.1 )
(BLAST)

001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG

Arabidopsis Description

PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.