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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, vacuole, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • endoplasmic reticulum 1
  • cytosol 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, vacuole
Any Predictor:cytosol, endoplasmic reticulum, nucleus, vacuole
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:vacuole
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY22740 plastid
CDY22909 plastid
CDY54970 plastid

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
ATCG00340.1 CDY22740 AT4G15510.1 23221595
ATCG00340.1 CDY22909 AT4G15510.1 23221595
ATCG00340.1 CDY54970 AT4G15510.1 23221595
ATCG00340.1 CDY22740 AT4G15510.1 23221595
ATCG00340.1 CDY22909 AT4G15510.1 23221595
ATCG00340.1 CDY54970 AT4G15510.1 23221595
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY15768 Canola cytosol, endoplasmic reticulum, vacuole 100.0 100.0
CDY29456 Canola cytosol, endoplasmic reticulum, vacuole 100.0 100.0
ATCG00340.1 Thale cress golgi, mitochondrion, plasma membrane, plastid 80.71 74.11
CDY39485 Canola mitochondrion, plastid 58.75 58.41
CDY43223 Canola extracellular 10.53 47.33
CDY67706 Canola plasma membrane, vacuole 29.82 34.6
CDX80066 Canola cytosol, plasma membrane, plastid 31.6 28.4
CDX99951 Canola cytosol, plasma membrane, plastid 31.6 28.4
CDY15767 Canola cytosol, plasma membrane, plastid 31.6 28.4
CDY29455 Canola cytosol, plasma membrane, plastid 31.6 28.4
CDY67707 Canola cytosol 0.0 0.0
Protein Annotations
Gene3D:1.20.1130.10MapMan:17.7.2.2.14Gene3D:4.10.830.10GO:A0A078EFV5UniProt:A0A078EFV5EnsemblPlants:CDX99952
ProteinID:CDX99952ProteinID:CDX99952.1ProteinID:CDY15768.1ProteinID:CDY29456.1GO:GO:0000287GO:GO:0003674
GO:GO:0003735GO:GO:0003824GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005840GO:GO:0006091GO:GO:0006412GO:GO:0006464
GO:GO:0008150GO:GO:0008152GO:GO:0009055GO:GO:0009058GO:GO:0009507GO:GO:0009522
GO:GO:0009536GO:GO:0009579GO:GO:0009987GO:GO:0015979GO:GO:0016020GO:GO:0016021
GO:GO:0016168GO:GO:0016491GO:GO:0018298GO:GO:0019538GO:GO:0022900GO:GO:0042651
GO:GO:0046872GO:GO:0051536GO:GO:0051539GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00108809001InterPro:IPR036408
HAMAP:MF_00537PFAM:PF00223PFAM:PF00253PRINTS:PR00257ScanProsite:PS00419ScanProsite:PS00527
InterPro:PSI_PsaA/BInterPro:PSI_PsaA/B_CSInterPro:PSI_PsaA/B_sfInterPro:PSI_PsaBPANTHER:PTHR30128PANTHER:PTHR30128:SF4
MetaCyc:PWY-101InterPro:Ribosomal_S14InterPro:Ribosomal_S14_CSInterPro:Ribosomal_S14_bac/plastidSUPFAM:SSF57716SUPFAM:SSF81558
TIGRFAMs:TIGR01336TMHMM:TMhelixUniParc:UPI0004EDAEADSEG:seg::
Description
BnaC09g27530DBnaC04g15560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EFV5]
Coordinates
chrLK031915:+:987183..989849
Molecular Weight (calculated)
75254.1 Da
IEP (calculated)
9.867
GRAVY (calculated)
-0.013
Length
674 amino acids
Sequence
(BLAST)
001: MTSRVMMILL KNTWIQDPLH VRPIAHAIWD PHFGQPAVEA FTRGGALGPV NIAYSGVYQW WYTIGLRTNE DLYTGALFLL FLSALSLIGG WLHLQPKWKP
101: RVSWFKNAES RLNHHLSGLF GVSSLAWTGH LVHVAIPASR GEYVRWNNFL SVLPHPQGLG PLFTGQWNLY AQNPDSSSHL FGTSQGSGTA ILTLLGGFHP
201: QTQSLWLTDM AHHHLAIAIL FLIAGHMYRT NFGIGHSIKD LLEAHIPPGG RLGRGHKGLY DTINNSIHFQ LGLALASLGV ITSLVAQHMY SLPAYAFIAQ
301: DFTTQAALYT HHQYIAGFIM TGAFAHGAIF FIRDYNPEQN EDNVLARMLD HKEAIISHLS WASLFLGFHT LGLYVHNDVM LAFGTPEKQI LIEPIFAQWI
401: QSAHGKTSYG FDVLLSSTNG PAFNAGRSIW LPGWLNAINE NSNSLFLTIG PGDFLVHHAI ALGLHTTTLI LVKGALDARG SKLMPDKKDF GYSFPCDGPG
501: RGGTCDISAW DAFYLAELIE TLAWAHERTP LANLIRWKDK PVALSIVQAR LVGLAHFSDP ICIIIIDNKR NLSIMAKKSL IYREKKRQKL EQKYHLIRRS
601: LKKEISEIPS LSEKWKIHGK LQSPPRNSAP TRLHRRCFST GRPRANYRDF GLSGHILREM VQACLLPGAT RSSW
Best Arabidopsis Sequence Match ( ATCG00340.1 )
(BLAST)
001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG
Arabidopsis Description
PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.