CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, nucleus, plasma membrane, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80066	Canola	cytosol, plasma membrane, plastid	100.0	100.0
CDX99951	Canola	cytosol, plasma membrane, plastid	100.0	100.0
CDY15767	Canola	cytosol, plasma membrane, plastid	100.0	100.0
CDY67706	Canola	plasma membrane, vacuole	77.47	100.0
AGP50755	Barley	plastid	97.07	97.07
HORVU6Hr1G049200.2	Barley	cytosol, plasma membrane, plastid	97.07	97.07
HORVU5Hr1G064640.2	Barley	cytosol, plasma membrane, plastid	96.4	96.4
Zm00001d000272_P001	Maize	plastid	71.47	96.23
CDY43223	Canola	extracellular	19.2	96.0
Bra041122.1-P	Field mustard	cytosol, vacuole	69.87	95.97
HORVU3Hr1G004680.1	Barley	cytosol, plasma membrane, plastid	56.67	95.94
TraesCS5D01G010900.1	Wheat	plastid	95.73	95.73
TraesCS3B01G185500.1	Wheat	plastid	95.6	95.6
TraesCSU01G200900.1	Wheat	cytosol, plasma membrane, plastid	95.6	95.6
CAA33996	Rice	plasma membrane	95.33	95.33
HORVU2Hr1G022470.1	Barley	cytosol, plastid	6.53	94.23
KRH55005	Soybean	cytosol, plasma membrane	11.33	92.39
TraesCS1B01G163900.1	Wheat	cytosol, plasma membrane, plastid	65.47	89.44
PGSC0003DMT400013730	Potato	plastid	27.47	89.18
Solyc12g033040.1.1	Tomato	cytosol	20.8	84.32
HORVU4Hr1G045310.1	Barley	extracellular	34.0	70.05
CDY29456	Canola	cytosol, endoplasmic reticulum, vacuole	28.4	31.6
CDY15768	Canola	cytosol, endoplasmic reticulum, vacuole	28.4	31.6
CDX99952	Canola	cytosol, endoplasmic reticulum, vacuole	28.4	31.6
CDY39485	Canola	mitochondrion, plastid	18.4	20.35
CDY67707	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:1.1.4.2.1	Gene3D:1.20.1130.10	ProteinID:ACY66263.1	ProteinID:AIK29004.1	ProteinID:AIZ06080.1	ProteinID:AKD00089.1
ProteinID:ASY95015.1	ProteinID:CDY15767.1	EnsemblPlants:CDY29455	ProteinID:CDY29455	ProteinID:CDY29455.1	GO:D1L8N8
UniProt:D1L8N8	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009522	GO:GO:0009536	GO:GO:0009579
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0016491
GO:GO:0018298	GO:GO:0019538	GO:GO:0022900	GO:GO:0042651	GO:GO:0046872	GO:GO:0051536
GO:GO:0051539	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00043079001	InterPro:IPR036408	HAMAP:MF_00458	PFAM:PF00223
PIRSF:PIRSF002905	PRINTS:PR00257	ScanProsite:PS00419	InterPro:PSI_PsaA	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_CS
InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF8	MetaCyc:PWY-101	SUPFAM:SSF81558	TIGRFAMs:TIGR01335
TMHMM:TMhelix	UniParc:UPI0001BBFF78	SEG:seg	:	:	:

Description

BnaC05g32150DPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/TrEMBL;Acc:D1L8N8]

Coordinates

chrLK032237:+:221881..224133

Molecular Weight (calculated)

83197.2 Da

IEP (calculated)

7.117

GRAVY (calculated)

0.239

Length

750 amino acids

Sequence
(BLAST)

001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQLWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS DFLTFRGGLD PVTGGLWLTD TAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGLK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIVVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNS
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSIV QGRAVGVTHY LLGGIATTWA FFLARIIAVG

Best Arabidopsis Sequence Match ( ATCG00350.1 )
(BLAST)

001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG

Arabidopsis Description

PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.