Factsheet for TraesCS5D01G010900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plastid

plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041122.1-P	Field mustard	cytosol, vacuole	71.2	97.8
HORVU5Hr1G064640.2	Barley	cytosol, plasma membrane, plastid	97.6	97.6
HORVU3Hr1G004680.1	Barley	cytosol, plasma membrane, plastid	57.6	97.52
Zm00001d000272_P001	Maize	plastid	72.27	97.31
TraesCS3B01G185500.1	Wheat	plastid	97.2	97.2
TraesCSU01G200900.1	Wheat	cytosol, plasma membrane, plastid	97.2	97.2
CAA33996	Rice	plasma membrane	96.27	96.27
CDY67706	Canola	plasma membrane, vacuole	74.27	95.87
CDY15767	Canola	cytosol, plasma membrane, plastid	95.73	95.73
CDY29455	Canola	cytosol, plasma membrane, plastid	95.73	95.73
CDX99951	Canola	cytosol, plasma membrane, plastid	95.73	95.73
CDX80066	Canola	cytosol, plasma membrane, plastid	95.73	95.73
KRH55005	Soybean	cytosol, plasma membrane	11.2	91.3
PGSC0003DMT400013730	Potato	plastid	26.8	87.01
Solyc12g033040.1.1	Tomato	cytosol	20.27	82.16
TraesCS1D01G181100.1	Wheat	golgi, mitochondrion, peroxisome, plasma membrane	33.73	34.52
TraesCS1D01G171400.1	Wheat	cytosol	6.13	24.47
CDY67707	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:1.1.4.2.1	Gene3D:1.20.1130.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009522	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR036408	HAMAP:MF_00458
PFAM:PF00223	PIRSF:PIRSF002905	PRINTS:PR00257	ScanProsite:PS00419	InterPro:PSI_PsaA	InterPro:PSI_PsaA/B
InterPro:PSI_PsaA/B_CS	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF8	SUPFAM:SSF81558	TIGRFAMs:TIGR01335
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5D01G010900	EnsemblPlants:TraesCS5D01G010900.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:+:6244418..6246670

Molecular Weight (calculated)

83172.3 Da

IEP (calculated)

6.931

GRAVY (calculated)

0.261

Length

750 amino acids

Sequence
(BLAST)

001: MIIRSPEPEV KIVVDRDPIK TSFEEWATPG HFSRTLAKGP DTTTWIWNLH ADAHDFDSHT GDLEEISRKV LSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTQIGP SAQVVWPIVG QEILNGDVGG GFRGIQITFG FFQLWRASGI TSELQLYCTA IGALIFAALM LFAGWFHYHE AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQIHVSLP INQFLDAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYA EFLTFRGGLD PVTGGLWLTD IGHHHLAIAI
301: LFLIAGHMYR TNWGIGHGLK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGST TIVVAHHMYS MPPYPYLATD YGTQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTTRY NDLLDRVLRH RNAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPIF AEWVQNIHAT APGVTAPGAT
501: TSTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGTI SDQGVVTHIT GGNFSQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESII
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIVVG

Best Arabidopsis Sequence Match ( ATCG00350.1 )
(BLAST)

001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG

Arabidopsis Description

PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.