Factsheet for TraesCS1D01G171400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G181100.1	Wheat	golgi, mitochondrion, peroxisome, plasma membrane	88.83	22.78
HORVU4Hr1G045260.1	Barley	cytosol	13.83	18.98
TraesCS5D01G010900.1	Wheat	plastid	24.47	6.13
Solyc01g017330.1.1	Tomato	extracellular	3.19	4.35
Solyc09g015300.1.1	Tomato	cytosol	0.0	0.0
TraesCS6A01G211700.1	Wheat	plastid	0.0	0.0
Solyc12g035740.1.1	Tomato	cytosol, mitochondrion, plastid	0.0	0.0
Solyc12g033050.1.1	Tomato	plastid	0.0	0.0
Solyc10g052740.1.1	Tomato	nucleus	0.0	0.0
Solyc09g018800.1.1	Tomato	cytosol	0.0	0.0
Solyc09g015340.1.1	Tomato	golgi	0.0	0.0
Solyc09g015320.1.1	Tomato	cytosol	0.0	0.0
Solyc06g009940.1.1	Tomato	nucleus	0.0	0.0
Solyc01g018090.1.1	Tomato	mitochondrion	0.0	0.0
Solyc01g017320.1.1	Tomato	cytosol, golgi, mitochondrion, plastid	0.0	0.0
Solyc01g017310.1.1	Tomato	mitochondrion	0.0	0.0
Solyc01g017300.1.1	Tomato	plastid	0.0	0.0
KRH49261	Soybean	cytosol, mitochondrion	0.0	0.0
KRH38575	Soybean	cytosol, plasma membrane, plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009522	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	InterPro:IPR036408	PFAM:PF00223	PRINTS:PR00257	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf
PANTHER:PTHR30128	PANTHER:PTHR30128:SF4	SUPFAM:SSF81558	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1D01G171400	EnsemblPlants:TraesCS1D01G171400.1

Description

No Description!

Coordinates

chr1D:-:244751582..244756069

Molecular Weight (calculated)

21971.4 Da

IEP (calculated)

8.644

GRAVY (calculated)

0.078

Length

188 amino acids

Sequence
(BLAST)

001: MSDKKDFGYS FPSDGPGHGR TCDISAWDTF YLAVFSMLNT TRWVTFYWHW KHITLWKGTV SQFNESSTYL MEWLRDYLWL NSSQLINGYN PFGMNSLSVW
101: VWMFLFGHLV WATGFMFLIS WQGYWQELIE TLACAHERTP LANLIRWRDK PVALSIVQAR LVGLARFSMG YIFTYATFLI ASTSGKFG

Best Arabidopsis Sequence Match ( ATCG00340.1 )
(BLAST)

001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG

Arabidopsis Description

PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.