Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g015340.1.1 | Tomato | golgi | 16.96 | 18.93 |
| Solyc02g020960.1.1 | Tomato | plastid | 6.96 | 5.65 |
| Solyc10g017890.1.1 | Tomato | nucleus | 7.39 | 5.41 |
| Solyc01g017300.1.1 | Tomato | plastid | 5.22 | 4.32 |
| Solyc09g015300.1.1 | Tomato | cytosol | 1.74 | 3.39 |
| Solyc09g018800.1.1 | Tomato | cytosol | 0.43 | 1.05 |
| Solyc12g033050.1.1 | Tomato | plastid | 0.0 | 0.0 |
| Solyc10g052740.1.1 | Tomato | nucleus | 0.0 | 0.0 |
| Solyc12g032980.1.1 | Tomato | nucleus | 0.0 | 0.0 |
| Solyc12g032990.1.1 | Tomato | plastid | 0.0 | 0.0 |
| Solyc12g033040.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| TraesCS6A01G211700.1 | Wheat | plastid | 0.0 | 0.0 |
| Solyc12g033060.1.1 | Tomato | plastid | 0.0 | 0.0 |
| Solyc12g035740.1.1 | Tomato | cytosol, mitochondrion, plastid | 0.0 | 0.0 |
| Solyc12g062600.1.1 | Tomato | cytosol, nucleus, plastid | 0.0 | 0.0 |
| TraesCS1D01G171400.1 | Wheat | cytosol | 0.0 | 0.0 |
| HORVU4Hr1G045260.1 | Barley | cytosol | 0.0 | 0.0 |
| Solyc10g017900.1.1 | Tomato | extracellular, golgi, plasma membrane | 0.0 | 0.0 |
| Solyc09g059640.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc07g021240.1.1 | Tomato | cytoskeleton, cytosol, plastid | 0.0 | 0.0 |
| Solyc06g009940.1.1 | Tomato | nucleus | 0.0 | 0.0 |
| Solyc05g020010.1.1 | Tomato | nucleus | 0.0 | 0.0 |
| Solyc01g018090.1.1 | Tomato | mitochondrion | 0.0 | 0.0 |
| Solyc01g017330.1.1 | Tomato | extracellular | 0.0 | 0.0 |
| Solyc01g017320.1.1 | Tomato | cytosol, golgi, mitochondrion, plastid | 0.0 | 0.0 |
| Solyc01g017310.1.1 | Tomato | mitochondrion | 0.0 | 0.0 |
| KRH49261 | Soybean | cytosol, mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1130.10 | MapMan:35.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009522 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR036408 | UniProt:K4CS04 | PFAM:PF00223 | InterPro:PSI_PsaA/B | InterPro:PSI_PsaA/B_sf |
| PANTHER:PTHR26312 | PANTHER:PTHR26312:SF81 | SUPFAM:SSF81558 | EnsemblPlantsGene:Solyc09g015320.1 | EnsemblPlants:Solyc09g015320.1.1 | UniParc:UPI000276BD25 |
Description
No Description!
Coordinates
chr9:+:8530904..8533442
Molecular Weight (calculated)
26578.5 Da
IEP (calculated)
6.032
GRAVY (calculated)
-0.221
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRSRINGNF IDKTFSIVAD ILLRVIPTTF GEKEAFTYYR DGNCAEALQN YYEVMRLEID PFDRSYILYN IGLIHTSNGE HNIGLIHTSN GEHTKALEYY
101: FRLAGLFVCV VRKEEDSIII RLQESEVKFF VNSNHVKTYF EEWARPGHFS RTIAKGIDIT TWIWDLHVDA HDFDSHTSDL EDISRKRQEI LNGDIGGGFR
201: GIQITCGFFQ LWRAFGTTSE LQLYCRAIGA
101: FRLAGLFVCV VRKEEDSIII RLQESEVKFF VNSNHVKTYF EEWARPGHFS RTIAKGIDIT TWIWDLHVDA HDFDSHTSDL EDISRKRQEI LNGDIGGGFR
201: GIQITCGFFQ LWRAFGTTSE LQLYCRAIGA
001: MSAQSEGNYA EALQNYYEAM RLEIDPYDRS YILYNIGLIH TSNGEHTKAL EYYFRALERN PFLPQAFNNM AVICHYRGEQ AIQQGDSEMA EAWFAQAAEY
101: WKQAITLTPG NYIEAQNWLT ITRRFE
101: WKQAITLTPG NYIEAQNWLT ITRRFE
Arabidopsis Description
YCF3Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:ATCG00360]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.