Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytoskeleton, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 4
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g106090.2.1 | plastid |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00340.1 | Solyc01g106090.2.1 | AT4G15510.1 | 23221595 |
| ATCG00340.1 | Solyc01g106090.2.1 | AT4G15510.1 | 23221595 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g062600.1.1 | Tomato | cytosol, nucleus, plastid | 50.89 | 86.87 |
| Solyc12g032990.1.1 | Tomato | plastid | 49.11 | 45.86 |
| HORVU0Hr1G029730.1 | Barley | endoplasmic reticulum | 34.91 | 45.74 |
| KRH37800 | Soybean | endoplasmic reticulum, plasma membrane | 44.97 | 41.08 |
| VIT_18s0001g08620.t01 | Wine grape | cytosol | 59.76 | 41.06 |
| Solyc12g033060.1.1 | Tomato | plastid | 65.68 | 40.66 |
| Solyc12g035740.1.1 | Tomato | cytosol, mitochondrion, plastid | 20.12 | 22.97 |
| Solyc01g017330.1.1 | Tomato | extracellular | 14.79 | 18.12 |
| ATCG00340.1 | Thale cress | golgi, mitochondrion, plasma membrane, plastid | 72.19 | 16.62 |
| Solyc12g033040.1.1 | Tomato | cytosol | 17.75 | 16.22 |
| Solyc05g020010.1.1 | Tomato | nucleus | 9.47 | 10.19 |
| Solyc10g017900.1.1 | Tomato | extracellular, golgi, plasma membrane | 7.69 | 9.22 |
| Solyc01g017320.1.1 | Tomato | cytosol, golgi, mitochondrion, plastid | 3.55 | 8.82 |
| Solyc12g033050.1.1 | Tomato | plastid | 8.88 | 7.58 |
| Solyc10g017890.1.1 | Tomato | nucleus | 7.1 | 3.82 |
| Solyc09g059640.1.1 | Tomato | cytosol | 1.78 | 2.68 |
| Solyc02g020960.1.1 | Tomato | plastid | 3.55 | 2.12 |
| Solyc10g052740.1.1 | Tomato | nucleus | 0.0 | 0.0 |
| Solyc01g017300.1.1 | Tomato | plastid | 0.0 | 0.0 |
| Solyc01g018090.1.1 | Tomato | mitochondrion | 0.0 | 0.0 |
| Solyc01g017310.1.1 | Tomato | mitochondrion | 0.0 | 0.0 |
| Solyc12g032980.1.1 | Tomato | nucleus | 0.0 | 0.0 |
| Solyc09g018800.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc09g015340.1.1 | Tomato | golgi | 0.0 | 0.0 |
| Solyc09g015320.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc09g015300.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc06g009940.1.1 | Tomato | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1130.10 | MapMan:35.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009522 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR036408 | UniProt:K4CCY2 | PFAM:PF00223 | PRINTS:PR00257 | InterPro:PSI_PsaA/B |
| InterPro:PSI_PsaA/B_sf | PANTHER:PTHR30128 | PANTHER:PTHR30128:SF4 | SUPFAM:SSF81558 | EnsemblPlantsGene:Solyc07g021240.1 | EnsemblPlants:Solyc07g021240.1.1 |
| TMHMM:TMhelix | UniParc:UPI000276C7D5 | : | : | : | : |
Description
No Description!
Coordinates
chr7:+:16794885..16795644
Molecular Weight (calculated)
19395.3 Da
IEP (calculated)
6.269
GRAVY (calculated)
0.140
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSLPAYAFI EQDFTTQAAL YTHHQYIAGF IMTGAFAHGA IFFIKDYNLE QNEDNVLARM LDHKEAIISH LSWASLFLGF HTLGLYVHND VTLPFGTPKK
101: QILIEPILIN GYNPLMDFGY SFPSDGLGRG GTCDISHGTH FIWQFFLDVK YYWMGYFLLA LESHHIMAR
101: QILIEPILIN GYNPLMDFGY SFPSDGLGRG GTCDISHGTH FIWQFFLDVK YYWMGYFLLA LESHHIMAR
001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG
Arabidopsis Description
PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.