Factsheet for HORVU0Hr1G029730.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
TargetP:	secretory
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G022750.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00340.1	HORVU5Hr1G022750.1	AT4G15510.1	23221595
ATCG00340.1	HORVU5Hr1G022750.1	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g062600.1.1	Tomato	cytosol, nucleus, plastid	44.19	57.58
KRH37800	Soybean	endoplasmic reticulum, plasma membrane	70.54	49.19
HORVU2Hr1G022470.1	Barley	cytosol, plastid	16.28	40.38
VIT_18s0001g08620.t01	Wine grape	cytosol	70.54	36.99
Solyc07g021240.1.1	Tomato	cytoskeleton, cytosol, plastid	45.74	34.91
HORVU1Hr1G038010.4	Barley	plastid	72.09	21.38
HORVU3Hr1G004700.1	Barley	plastid	71.32	20.31
HORVU5Hr1G064630.2	Barley	plastid	72.09	20.0
HORVU4Hr1G045300.1	Barley	cytosol	72.09	16.58
AGP50754	Barley	plastid	73.64	12.94
HORVU6Hr1G049190.1	Barley	golgi, mitochondrion, peroxisome, plasma membrane	73.64	12.94
HORVU4Hr1G045310.1	Barley	extracellular	36.43	12.91
ATCG00340.1	Thale cress	golgi, mitochondrion, plasma membrane, plastid	72.87	12.81
HORVU3Hr1G004680.1	Barley	cytosol, plasma membrane, plastid	39.53	11.51
CDY39485	Canola	mitochondrion, plastid	37.98	7.23
HORVU5Hr1G064640.2	Barley	cytosol, plasma membrane, plastid	39.53	6.8
HORVU6Hr1G049200.2	Barley	cytosol, plasma membrane, plastid	39.53	6.8
AGP50755	Barley	plastid	39.53	6.8
HORVU6Hr1G037020.1	Barley	plastid	3.1	1.82
HORVU4Hr1G045260.1	Barley	cytosol	1.55	1.46
HORVU0Hr1G034550.1	Barley	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	UniProt:A0A287E9Y5	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009522	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:HORVU0Hr1G029730	EnsemblPlants:HORVU0Hr1G029730.1	InterPro:IPR036408	PFAM:PF00223
PRINTS:PR00257	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF4	SUPFAM:SSF81558
TMHMM:TMhelix	UniParc:UPI000B46C461	:	:	:	:

Description

No Description!

Coordinates

chrchrUn:-:165189464..165189922

Molecular Weight (calculated)

14558.6 Da

IEP (calculated)

6.793

GRAVY (calculated)

0.084

Length

129 amino acids

Sequence
(BLAST)

001: GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPPYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP EQNEDNVLAR MLDRYNLLMA
101: RRHMGSIYSY LQRMAPLSMR VEAYGCPDG

Best Arabidopsis Sequence Match ( ATCG00340.1 )
(BLAST)

001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG

Arabidopsis Description

PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.