Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- plasma membrane 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AGP50755 | Barley | plastid | 99.33 | 99.33 |
| HORVU6Hr1G049200.2 | Barley | cytosol, plasma membrane, plastid | 99.33 | 99.33 |
| Bra041122.1-P | Field mustard | cytosol, vacuole | 71.6 | 98.35 |
| TraesCS3B01G185500.1 | Wheat | plastid | 97.87 | 97.87 |
| HORVU3Hr1G004680.1 | Barley | cytosol, plasma membrane, plastid | 57.73 | 97.74 |
| Zm00001d000272_P001 | Maize | plastid | 72.53 | 97.67 |
| TraesCS5D01G010900.1 | Wheat | plastid | 97.6 | 97.6 |
| CAA33996 | Rice | plasma membrane | 97.07 | 97.07 |
| CDY15767 | Canola | cytosol, plasma membrane, plastid | 96.4 | 96.4 |
| CDX80066 | Canola | cytosol, plasma membrane, plastid | 96.4 | 96.4 |
| CDX99951 | Canola | cytosol, plasma membrane, plastid | 96.4 | 96.4 |
| CDY29455 | Canola | cytosol, plasma membrane, plastid | 96.4 | 96.4 |
| CDY67706 | Canola | plasma membrane, vacuole | 74.67 | 96.39 |
| HORVU2Hr1G022470.1 | Barley | cytosol, plastid | 6.67 | 96.15 |
| KRH55005 | Soybean | cytosol, plasma membrane | 11.2 | 91.3 |
| PGSC0003DMT400013730 | Potato | plastid | 26.8 | 87.01 |
| HORVU6Hr1G037020.1 | Barley | plastid | 25.33 | 86.36 |
| Solyc12g033040.1.1 | Tomato | cytosol | 20.27 | 82.16 |
| HORVU4Hr1G045310.1 | Barley | extracellular | 34.93 | 71.98 |
| HORVU1Hr1G038010.4 | Barley | plastid | 23.6 | 40.69 |
| HORVU0Hr1G029730.1 | Barley | endoplasmic reticulum | 6.8 | 39.53 |
| HORVU5Hr1G064630.2 | Barley | plastid | 24.4 | 39.35 |
| HORVU6Hr1G049190.1 | Barley | golgi, mitochondrion, peroxisome, plasma membrane | 34.8 | 35.56 |
| AGP50754 | Barley | plastid | 34.8 | 35.56 |
| HORVU3Hr1G004700.1 | Barley | plastid | 20.67 | 34.22 |
| HORVU4Hr1G045260.1 | Barley | cytosol | 5.6 | 30.66 |
| HORVU4Hr1G045300.1 | Barley | cytosol | 15.87 | 21.21 |
| CDY67707 | Canola | cytosol | 0.0 | 0.0 |
| HORVU0Hr1G034550.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:1.1.4.2.1 | Gene3D:1.20.1130.10 | UniProt:A0A287RJR3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009522 |
| GO:GO:0009579 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 |
| EnsemblPlantsGene:HORVU5Hr1G064640 | EnsemblPlants:HORVU5Hr1G064640.2 | InterPro:IPR036408 | HAMAP:MF_00458 | PFAM:PF00223 | PIRSF:PIRSF002905 |
| PRINTS:PR00257 | ScanProsite:PS00419 | InterPro:PSI_PsaA | InterPro:PSI_PsaA/B | InterPro:PSI_PsaA/B_CS | InterPro:PSI_PsaA/B_sf |
| PANTHER:PTHR30128 | PANTHER:PTHR30128:SF8 | SUPFAM:SSF81558 | TIGRFAMs:TIGR01335 | TMHMM:TMhelix | UniParc:UPI000B481E2E |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:498616817..498619069
Molecular Weight (calculated)
83218.3 Da
IEP (calculated)
7.117
GRAVY (calculated)
0.247
Length
750 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIRSPEPEV KIVVDRDPVK TSFEEWARPG HFSRTLAKGP DTTTWIWNLH ADAHDFDSHT GDLEQISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQLWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQIHVSLP INQFLDAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYA EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGLK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGST TIVVAHHMYS MPPYPYLATD YGTQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTTRY NDLLDRILRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPIF AQWVQNIHAT APGVTAPGAT
501: TSTSLTWEGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGTI SDQGVVTHIA GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP PTQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQLWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQIHVSLP INQFLDAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYA EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGLK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGST TIVVAHHMYS MPPYPYLATD YGTQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTTRY NDLLDRILRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPIF AQWVQNIHAT APGVTAPGAT
501: TSTSLTWEGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGTI SDQGVVTHIA GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP PTQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG
001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG
Arabidopsis Description
PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.