Factsheet for Zm00001d000272_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 1
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

plastid: 18453340
plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 18453340 doi

W Majeran, B Zybailov, AJ Ytterberg, J Dunsmore, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G004680.1	Barley	cytosol, plasma membrane, plastid	77.74	97.74
Bra041122.1-P	Field mustard	cytosol, vacuole	91.02	92.86
KRH55005	Soybean	cytosol, plasma membrane	15.26	92.39
CDY67706	Canola	plasma membrane, vacuole	96.23	92.25
PGSC0003DMT400013730	Potato	plastid	36.45	87.88
Solyc12g033040.1.1	Tomato	cytosol	27.83	83.78
CAA33996	Rice	plasma membrane	98.38	73.07
HORVU5Hr1G064640.2	Barley	cytosol, plasma membrane, plastid	97.67	72.53
TraesCS3B01G185500.1	Wheat	plastid	97.31	72.27
TraesCS5D01G010900.1	Wheat	plastid	97.31	72.27
TraesCSU01G200900.1	Wheat	cytosol, plasma membrane, plastid	97.31	72.27
CDX80066	Canola	cytosol, plasma membrane, plastid	96.23	71.47
CDX99951	Canola	cytosol, plasma membrane, plastid	96.23	71.47
CDY15767	Canola	cytosol, plasma membrane, plastid	96.23	71.47
CDY29455	Canola	cytosol, plasma membrane, plastid	96.23	71.47
CDY67707	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:1.1.4.2.1	Gene3D:1.20.1130.10	UniProt:A0A1X7YHD7	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009522
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0016491	GO:GO:0018298	GO:GO:0019538	GO:GO:0022900
GO:GO:0042651	GO:GO:0046872	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	InterPro:IPR036408
PFAM:PF00223	PRINTS:PR00257	ScanProsite:PS00419	InterPro:PSI_PsaA	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_CS
InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF8	SUPFAM:SSF81558	SignalP:SignalP-noTM	TIGRFAMs:TIGR01335
TMHMM:TMhelix	UniParc:UPI000842AE6C	EnsemblPlantsGene:Zm00001d000272	EnsemblPlants:Zm00001d000272_P001	EnsemblPlants:Zm00001d000272_T001	SEG:seg

Description

Photosystem I P700 chlorophyll a apoprotein A2

Coordinates

chrB73V4_ctg134:-:37464..39137

Molecular Weight (calculated)

61427.5 Da

IEP (calculated)

7.592

GRAVY (calculated)

0.336

Length

557 amino acids

Sequence
(BLAST)

001: MLNHHLAGLL GLGSLSWAGH QIHVSLPINQ FLDAGVDPKE IPLPHEFILN RDLLAQLYPS FAEGATPFFT LNWSKYAEFL SFRGGLDPIT GGLWLSDIAH
101: HHLAIAILFL IAGHMYRTNW GIGHGLKDIL EAHKGPFTGQ GHKGLYEILT TSWHAQLSLN LAMLGSTTIV VAHHMYSMPP YPYLATDYGT QLSLFTHHMW
201: IGGFLIVGAA AHAAIFMVRD YDPTTRYNDL LDRVLRHRDA IISHLNWVCI FLGFHSFGLY IHNDTMSALG RPQDMFSDTA IQLQPIFAQW IQNIHAGAPG
301: VTAPGATTST SLTWGGGELV AIGGKVALLP IPLGTADFLV HHIHAFTIHV TVLILLKGVL FARSSRLIPD KANLGFRFPC DGPGRGGTCQ VSAWDHVFLG
401: LFWMYNSISV VIFHFSWKMQ SDVWGTISDQ GIVTHITGGN FAQSSITING WLRDFLWAQA SQVIQSYGSS LSAYGLFFLG AHFVWAFSLM FLFSGRGYWQ
501: ELIESIVWAH NKLKVAPATQ PRALSIIQGR AVGVTHYLLG GIATTWAFFL ARIIAVG

Best Arabidopsis Sequence Match ( ATCG00350.1 )
(BLAST)

001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG

Arabidopsis Description

PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.