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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plastid
plasma membrane: 27800704
extracellular: 28232208
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d000272_P001 Maize plastid 73.07 98.38
HORVU6Hr1G049200.2 Barley cytosol, plasma membrane, plastid 97.73 97.73
AGP50755 Barley plastid 97.73 97.73
HORVU3Hr1G004680.1 Barley cytosol, plasma membrane, plastid 57.47 97.29
HORVU5Hr1G064640.2 Barley cytosol, plasma membrane, plastid 97.07 97.07
Bra041122.1-P Field mustard cytosol, vacuole 70.4 96.7
TraesCSU01G200900.1 Wheat cytosol, plasma membrane, plastid 96.53 96.53
TraesCS5D01G010900.1 Wheat plastid 96.27 96.27
HORVU2Hr1G022470.1 Barley cytosol, plastid 6.67 96.15
CDY67706 Canola plasma membrane, vacuole 74.13 95.7
CDY29455 Canola cytosol, plasma membrane, plastid 95.33 95.33
CDX80066 Canola cytosol, plasma membrane, plastid 95.33 95.33
CDY15767 Canola cytosol, plasma membrane, plastid 95.33 95.33
CDX99951 Canola cytosol, plasma membrane, plastid 95.33 95.33
KRH55005 Soybean cytosol, plasma membrane 11.33 92.39
TraesCS1B01G163800.1 Wheat cytosol, plasma membrane, plastid 66.53 90.89
PGSC0003DMT400013730 Potato plastid 26.8 87.01
Solyc12g033040.1.1 Tomato cytosol 20.53 83.24
HORVU4Hr1G045310.1 Barley extracellular 34.4 70.88
CAA33995 Rice plasma membrane 34.27 35.01
CDY67707 Canola cytosol 0.0 0.0
Protein Annotations
MapMan:1.1.4.2.1Gene3D:1.20.1130.10EnsemblPlants:CAA33996EnsemblPlantsGene:CAA33996ProteinID:CAA33996ProteinID:CAA33996.1
GO:GO:0000287GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0006091GO:GO:0006464GO:GO:0008150GO:GO:0008152
GO:GO:0009055GO:GO:0009507GO:GO:0009522GO:GO:0009535GO:GO:0009536GO:GO:0009579
GO:GO:0009987GO:GO:0015979GO:GO:0016020GO:GO:0016021GO:GO:0016168GO:GO:0016491
GO:GO:0018298GO:GO:0019538GO:GO:0022900GO:GO:0046872GO:GO:0051536GO:GO:0051539
GO:GO:0055114InterPro:IPR036408HAMAP:MF_00458PFAM:PF00223PIRSF:PIRSF002905PRINTS:PR00257
ScanProsite:PS00419InterPro:PSI_PsaAInterPro:PSI_PsaA/BInterPro:PSI_PsaA/B_CSInterPro:PSI_PsaA/B_sfPANTHER:PTHR30128
PANTHER:PTHR30128:SF8MetaCyc:PWY-101SUPFAM:SSF81558TIGRFAMs:TIGR01335TMHMM:TMhelixUniParc:UPI000013248D
SEG:seg:::::
Description
psaAPSI P700 apoprotein A1
Coordinates
chrPt:-:38998..41250
Molecular Weight (calculated)
83389.5 Da
IEP (calculated)
7.349
GRAVY (calculated)
0.221
Length
750 amino acids
Sequence
(BLAST)
001: MMIRSPEPEV KIVVDRDPVK TSFEEWARPG HFSRTLAKGP DTTTWIWNLH ADAHDFDSHT GDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQISSG FFQIWRASGI TSELQLYCTA IGALIFASLM LFAGWFHYHK AAPKLAWSHD VESMLNHHLA
201: GLLGLGSLSW AGHQIHVSLP INQFLDAGVD PKEIPLPHEF ILNRDLLAQL YPSFAERATP FFTLNWSKYA EFLSFRGGLD PITGGLWLSD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGLK DILEAHKGPF TGQRHKGLYE ILTTSWHAQL SLNLAMLGST TIVVAHHMYS MPPYPYLATD YGTQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTTRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPIF AQWVQNLHAG APRLTAPGAT
501: TSTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNS
601: ISVVIFHFSW KMQSDVWGTI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG
Best Arabidopsis Sequence Match ( ATCG00350.1 )
(BLAST)
001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG
Arabidopsis Description
PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.