Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G189100.1 | Wheat | cytosol, plasma membrane, plastid | 31.69 | 93.05 |
| TraesCS6B01G234800.1 | Wheat | cytosol, plasma membrane, plastid | 92.35 | 92.18 |
| TraesCS1B01G163900.1 | Wheat | cytosol, plasma membrane, plastid | 88.52 | 88.52 |
| KRH55005 | Soybean | cytosol, plasma membrane | 14.57 | 86.96 |
| PGSC0003DMT400013730 | Potato | plastid | 34.79 | 82.68 |
| Solyc12g033040.1.1 | Tomato | cytosol | 26.96 | 80.0 |
| TraesCS6B01G208100.1 | Wheat | golgi, plasma membrane, plastid | 89.8 | 74.36 |
| TraesCS3B01G185500.1 | Wheat | plastid | 91.62 | 67.07 |
| CAA33996 | Rice | plasma membrane | 90.89 | 66.53 |
| TraesCS2B01G487400.1 | Wheat | plastid | 35.7 | 26.7 |
Protein Annotations
| MapMan:1.1.4.2.1 | Gene3D:1.20.1130.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009522 | GO:GO:0009579 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | InterPro:IPR036408 | PFAM:PF00223 |
| PRINTS:PR00257 | ScanProsite:PS00419 | InterPro:PSI_PsaA | InterPro:PSI_PsaA/B | InterPro:PSI_PsaA/B_CS | InterPro:PSI_PsaA/B_sf |
| PANTHER:PTHR30128 | PANTHER:PTHR30128:SF8 | SUPFAM:SSF81558 | TIGRFAMs:TIGR01335 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS1B01G163800 |
| EnsemblPlants:TraesCS1B01G163800.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:286034601..286036252
Molecular Weight (calculated)
60934.9 Da
IEP (calculated)
7.545
GRAVY (calculated)
0.327
Length
549 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTDLSSLSW AGHQIHVSLP INQFLDVGVD PKEIPLPHEF ILNRDLLAQL YPSFAKGATP FFTLNWSKYA EFLTFCGGLD PVTGSLWQTD IVHHHLAIAI
101: LFLIACHMYR TNWGIGHGLK DILEAHKGPF TGQGHKGFYE ILTTSCYAQL SLNLAMLGST TIVVAHHMYS MPPYPYLPTD YGTQLSLFTH HMWIGGFLIV
201: GAATHAAIFM VGNYDPTTRY NDLLDRVLRH HDAIISHLNW VCIFLGFHSF GLYIHNDTMS TLGRPQDMFS DTAIQLQPIF SQWVQNIHAT APGVIAPGAT
301: TSTSLTRGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHMIVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSTWDHV FLGLFWMYNA
401: ISVVIFHFSW KMQSDDWGTI SDQGVVTHIT GNFAQSSITI NGWLRYFLWA HASQVIQSYG SSLSAYGLFF LGAHFVWAFS LMVLFSSHAY RQELIESIVW
501: AHNKFKVSPA TQPRALSIIQ GHAVGVTYYL LGGIAMTWAF FLARIIAVG
101: LFLIACHMYR TNWGIGHGLK DILEAHKGPF TGQGHKGFYE ILTTSCYAQL SLNLAMLGST TIVVAHHMYS MPPYPYLPTD YGTQLSLFTH HMWIGGFLIV
201: GAATHAAIFM VGNYDPTTRY NDLLDRVLRH HDAIISHLNW VCIFLGFHSF GLYIHNDTMS TLGRPQDMFS DTAIQLQPIF SQWVQNIHAT APGVIAPGAT
301: TSTSLTRGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHMIVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSTWDHV FLGLFWMYNA
401: ISVVIFHFSW KMQSDDWGTI SDQGVVTHIT GNFAQSSITI NGWLRYFLWA HASQVIQSYG SSLSAYGLFF LGAHFVWAFS LMVLFSSHAY RQELIESIVW
501: AHNKFKVSPA TQPRALSIIQ GHAVGVTYYL LGGIAMTWAF FLARIIAVG
001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG
Arabidopsis Description
PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [plastid,golgi,plasma membrane,mitochondrion]
SUBAcon: [plastid,golgi,plasma membrane,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.