Factsheet for Solyc12g033040.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g017900.1.1	Tomato	extracellular, golgi, plasma membrane	39.46	51.77
Solyc01g017330.1.1	Tomato	extracellular	36.76	49.28
PGSC0003DMT400013730	Potato	plastid	45.41	36.36
HORVU3Hr1G004680.1	Barley	cytosol, plasma membrane, plastid	83.24	34.76
KRH55005	Soybean	cytosol, plasma membrane	16.76	33.7
Bra041122.1-P	Field mustard	cytosol, vacuole	83.24	28.21
TraesCS6B01G234800.1	Wheat	cytosol, plasma membrane, plastid	83.24	28.0
Zm00001d000272_P001	Maize	plastid	83.78	27.83
Solyc12g032990.1.1	Tomato	plastid	27.03	27.62
TraesCS1B01G163800.1	Wheat	cytosol, plasma membrane, plastid	80.0	26.96
CDY67706	Canola	plasma membrane, vacuole	84.32	26.85
TraesCS1B01G163900.1	Wheat	cytosol, plasma membrane, plastid	78.92	26.59
Solyc12g033060.1.1	Tomato	plastid	33.51	22.71
TraesCS6B01G208100.1	Wheat	golgi, plasma membrane, plastid	81.08	22.62
CDX80066	Canola	cytosol, plasma membrane, plastid	84.32	20.8
CDY29455	Canola	cytosol, plasma membrane, plastid	84.32	20.8
CDY15767	Canola	cytosol, plasma membrane, plastid	84.32	20.8
CDX99951	Canola	cytosol, plasma membrane, plastid	84.32	20.8
AGP50755	Barley	plastid	83.24	20.53
CAA33996	Rice	plasma membrane	83.24	20.53
HORVU6Hr1G049200.2	Barley	cytosol, plasma membrane, plastid	83.24	20.53
TraesCS3B01G185500.1	Wheat	plastid	82.7	20.4
TraesCSU01G200900.1	Wheat	cytosol, plasma membrane, plastid	82.7	20.4
TraesCS5D01G010900.1	Wheat	plastid	82.16	20.27
HORVU5Hr1G064640.2	Barley	cytosol, plasma membrane, plastid	82.16	20.27
Solyc07g021240.1.1	Tomato	cytoskeleton, cytosol, plastid	16.22	17.75
Solyc05g020010.1.1	Tomato	nucleus	12.97	15.29
Solyc12g062600.1.1	Tomato	cytosol, nucleus, plastid	7.57	14.14
HORVU4Hr1G045310.1	Barley	extracellular	16.76	8.52
Solyc10g017890.1.1	Tomato	nucleus	8.65	5.1
Solyc12g033050.1.1	Tomato	plastid	3.24	3.03
Solyc12g035740.1.1	Tomato	cytosol, mitochondrion, plastid	1.62	2.03
Solyc02g020960.1.1	Tomato	plastid	0.54	0.35
Solyc09g015340.1.1	Tomato	golgi	0.0	0.0
Solyc12g032980.1.1	Tomato	nucleus	0.0	0.0
Solyc10g052740.1.1	Tomato	nucleus	0.0	0.0
Solyc09g059640.1.1	Tomato	cytosol	0.0	0.0
Solyc09g018800.1.1	Tomato	cytosol	0.0	0.0
CDY67707	Canola	cytosol	0.0	0.0
Solyc09g015320.1.1	Tomato	cytosol	0.0	0.0
Solyc09g015300.1.1	Tomato	cytosol	0.0	0.0
Solyc06g009940.1.1	Tomato	nucleus	0.0	0.0
Solyc01g018090.1.1	Tomato	mitochondrion	0.0	0.0
Solyc01g017320.1.1	Tomato	cytosol, golgi, mitochondrion, plastid	0.0	0.0
Solyc01g017310.1.1	Tomato	mitochondrion	0.0	0.0
Solyc01g017300.1.1	Tomato	plastid	0.0	0.0
HORVU2Hr1G022470.1	Barley	cytosol, plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009522	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR036408	UniProt:K4DDX2
PFAM:PF00223	InterPro:PSI_PsaA	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF8
SUPFAM:SSF81558	EnsemblPlantsGene:Solyc12g033040.1	EnsemblPlants:Solyc12g033040.1.1	TMHMM:TMhelix	UniParc:UPI0002769CFB	SEG:seg

Description

No Description!

Coordinates

chr12:-:60950830..60951442

Molecular Weight (calculated)

20765.3 Da

IEP (calculated)

7.636

GRAVY (calculated)

0.250

Length

185 amino acids

Sequence
(BLAST)

001: MVRDYDPTTR YNDLLDRVLR HRDAIISHLN WMRDLGRPQD MFSDTSIQLQ PVFIQWIQNT HALAPGATAS GATTSTSLTW GGGDLVAVGG KVALLPILLG
101: TTNFFVHHIH ACTTLVTVLI LLKGVLFAPS SCLILDKENL GFYFPCDGPG RMGTYQVSTW DHIFLGLFWM YNSISVVIFR FSWKM

Best Arabidopsis Sequence Match ( ATCG00350.1 )
(BLAST)

001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG

Arabidopsis Description

PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.