Factsheet for Solyc01g017300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g015300.1.1	Tomato	cytosol	3.24	7.63
Solyc09g018800.1.1	Tomato	cytosol	2.52	7.37
Solyc09g015340.1.1	Tomato	golgi	4.68	6.31
Solyc09g015320.1.1	Tomato	cytosol	4.32	5.22
Solyc02g020960.1.1	Tomato	plastid	2.52	2.47
Solyc10g017890.1.1	Tomato	nucleus	1.8	1.59
Solyc12g033040.1.1	Tomato	cytosol	0.0	0.0
Solyc10g052740.1.1	Tomato	nucleus	0.0	0.0
Solyc12g032980.1.1	Tomato	nucleus	0.0	0.0
Solyc12g032990.1.1	Tomato	plastid	0.0	0.0
TraesCS6A01G211700.1	Wheat	plastid	0.0	0.0
Solyc12g033050.1.1	Tomato	plastid	0.0	0.0
Solyc12g033060.1.1	Tomato	plastid	0.0	0.0
Solyc12g035740.1.1	Tomato	cytosol, mitochondrion, plastid	0.0	0.0
Solyc12g062600.1.1	Tomato	cytosol, nucleus, plastid	0.0	0.0
TraesCS1D01G171400.1	Wheat	cytosol	0.0	0.0
HORVU4Hr1G045260.1	Barley	cytosol	0.0	0.0
Solyc10g017900.1.1	Tomato	extracellular, golgi, plasma membrane	0.0	0.0
Solyc09g059640.1.1	Tomato	cytosol	0.0	0.0
Solyc07g021240.1.1	Tomato	cytoskeleton, cytosol, plastid	0.0	0.0
Solyc06g009940.1.1	Tomato	nucleus	0.0	0.0
Solyc05g020010.1.1	Tomato	nucleus	0.0	0.0
Solyc01g018090.1.1	Tomato	mitochondrion	0.0	0.0
Solyc01g017330.1.1	Tomato	extracellular	0.0	0.0
Solyc01g017320.1.1	Tomato	cytosol, golgi, mitochondrion, plastid	0.0	0.0
Solyc01g017310.1.1	Tomato	mitochondrion	0.0	0.0
KRH49261	Soybean	cytosol, mitochondrion	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.20.1130.10	Gene3D:2.40.50.100	Gene3D:2.40.50.150	MapMan:35.1
InterPro:DNA-dir_RNAP_su2_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009522
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0032549	GO:GO:0046872	InterPro:IPR014724	InterPro:IPR036408	UniProt:K4AUR1
PFAM:PF00223	PFAM:PF00562	InterPro:PSI_PsaA	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128
PANTHER:PTHR30128:SF8	InterPro:RNA_pol_RPB2_OB-fold	SUPFAM:SSF64484	SUPFAM:SSF81558	EnsemblPlantsGene:Solyc01g017300.1	EnsemblPlants:Solyc01g017300.1.1
UniParc:UPI000276292E	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:23934630..23936249

Molecular Weight (calculated)

31015.3 Da

IEP (calculated)

7.627

GRAVY (calculated)

-0.083

Length

278 amino acids

Sequence
(BLAST)

001: MASWNSAKVS ANQGLNWIIS TNIHKIHLAG NGDILSIPLV IYQLSKKNTC MHQKFRVPWG KCNKKEQMLA DGAATVGGEL ALGKNVLVTK KGIVVLGCWV
101: EKGDILVGKL TLKVVKESSY APEDMPYLKD GISVDMVFSP LGVPSRMNVR QIFECSLGLA WSLLDRNYRI VDRDPVKISF DEWDRQGHFS RTTAKGHDTT
201: TWICNLHVDA HDCDSYTSDL EEISQKVSSA HFGQLSIIFL WLSGMYFHGA HFSNYEAWLS DPTHIGPSAQ VVWLIVGH

Best Arabidopsis Sequence Match ( ATCG00350.1 )
(BLAST)

001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG

Arabidopsis Description

PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.