Factsheet for Solyc12g032990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g106090.2.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00340.1	Solyc01g106090.2.1	AT4G15510.1	23221595
ATCG00340.1	Solyc01g106090.2.1	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g062600.1.1	Tomato	cytosol, nucleus, plastid	33.15	60.61
Solyc12g033060.1.1	Tomato	plastid	77.9	51.65
Solyc07g021240.1.1	Tomato	cytoskeleton, cytosol, plastid	45.86	49.11
HORVU5Hr1G064630.2	Barley	plastid	85.08	33.12
HORVU1Hr1G038010.4	Barley	plastid	75.69	31.49
Solyc10g017900.1.1	Tomato	extracellular, golgi, plasma membrane	22.1	28.37
Solyc12g033040.1.1	Tomato	cytosol	27.62	27.03
Solyc01g017330.1.1	Tomato	extracellular	17.68	23.19
TraesCS2B01G487400.1	Wheat	plastid	85.64	21.12
AGP50754	Barley	plastid	85.64	21.12
ATCG00340.1	Thale cress	golgi, mitochondrion, plasma membrane, plastid	85.64	21.12
CAA33995	Rice	plasma membrane	85.64	21.12
HORVU6Hr1G049190.1	Barley	golgi, mitochondrion, peroxisome, plasma membrane	85.64	21.12
TraesCS1D01G181100.1	Wheat	golgi, mitochondrion, peroxisome, plasma membrane	83.98	20.74
Solyc05g020010.1.1	Tomato	nucleus	14.36	16.56
Solyc12g035740.1.1	Tomato	cytosol, mitochondrion, plastid	12.71	15.54
HORVU3Hr1G004700.1	Barley	plastid	38.12	15.23
HORVU4Hr1G045300.1	Barley	cytosol	24.86	8.02
Solyc01g017320.1.1	Tomato	cytosol, golgi, mitochondrion, plastid	2.76	7.35
Solyc12g033050.1.1	Tomato	plastid	6.08	5.56
Solyc10g017890.1.1	Tomato	nucleus	4.42	2.55
Solyc02g020960.1.1	Tomato	plastid	1.1	0.71
GSMUA_AchrUn_...	Banana	cytosol, golgi	7.18	0.25
Solyc09g015320.1.1	Tomato	cytosol	0.0	0.0
Solyc09g015340.1.1	Tomato	golgi	0.0	0.0
Solyc09g018800.1.1	Tomato	cytosol	0.0	0.0
Solyc09g059640.1.1	Tomato	cytosol	0.0	0.0
Solyc09g015300.1.1	Tomato	cytosol	0.0	0.0
Solyc10g052740.1.1	Tomato	nucleus	0.0	0.0
Solyc12g032980.1.1	Tomato	nucleus	0.0	0.0
Solyc06g009940.1.1	Tomato	nucleus	0.0	0.0
Solyc01g018090.1.1	Tomato	mitochondrion	0.0	0.0
Solyc01g017300.1.1	Tomato	plastid	0.0	0.0
Solyc01g017310.1.1	Tomato	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009522	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	InterPro:IPR036408	UniProt:K4DDW7	PFAM:PF00223	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf
PANTHER:PTHR30128	PANTHER:PTHR30128:SF4	SUPFAM:SSF81558	EnsemblPlantsGene:Solyc12g032990.1	EnsemblPlants:Solyc12g032990.1.1	UniParc:UPI0002769CF6

Description

No Description!

Coordinates

chr12:-:61003290..61004086

Molecular Weight (calculated)

20899.9 Da

IEP (calculated)

6.427

GRAVY (calculated)

0.021

Length

181 amino acids

Sequence
(BLAST)

001: MYSLPTYAFI AQEFTTQAAL YTHHQYIRLQ STEQNEDNVL ERMLDHKEAI IYHLSWVSLF LGFHTLGLYV HNDVMVAFGP GDFLAHHAIA LDLHTTTLIL
101: VKGVLDACGS KLIPDKKDFG YSFLRDGPGR GGSCDNSAWD TFYLAVFWIL NTIRWVTFYW HWKHITLWQG NISQFNESPL I

Best Arabidopsis Sequence Match ( ATCG00340.1 )
(BLAST)

001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG

Arabidopsis Description

PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.