Factsheet for TraesCS1D01G181100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, golgi, plasma membrane

Predictor Summary:

golgi 1
mitochondrion 2
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G087200.1	plastid
TraesCS5B01G093100.1	plastid
TraesCS5D01G099000.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00340.1	TraesCS5A01G087200.1	AT4G15510.1	23221595
ATCG00340.1	TraesCS5B01G093100.1	AT4G15510.1	23221595
ATCG00340.1	TraesCS5D01G099000.1	AT4G15510.1	23221595
ATCG00340.1	TraesCS5A01G087200.1	AT4G15510.1	23221595
ATCG00340.1	TraesCS5B01G093100.1	AT4G15510.1	23221595
ATCG00340.1	TraesCS5D01G099000.1	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AGP50754	Barley	plastid	97.82	97.68
HORVU6Hr1G049190.1	Barley	golgi, mitochondrion, peroxisome, plasma membrane	97.82	97.68
TraesCS2B01G487400.1	Wheat	plastid	97.27	97.14
CAA33995	Rice	plasma membrane	97.14	97.0
ATCG00340.1	Thale cress	golgi, mitochondrion, plasma membrane, plastid	94.82	94.69
HORVU3Hr1G004700.1	Barley	plastid	55.25	89.4
TraesCS1D01G171400.1	Wheat	cytosol	22.78	88.83
HORVU1Hr1G038010.4	Barley	plastid	50.89	85.75
Solyc12g032990.1.1	Tomato	plastid	20.74	83.98
Solyc12g032980.1.1	Tomato	nucleus	14.87	83.21
KRH37800	Soybean	endoplasmic reticulum, plasma membrane	20.6	81.62
VIT_18s0001g08620.t01	Wine grape	cytosol	22.1	65.85
CDY39485	Canola	mitochondrion, plastid	37.24	40.27
HORVU4Hr1G045300.1	Barley	cytosol	26.74	34.94
TraesCS5D01G010900.1	Wheat	plastid	34.52	33.73
GSMUA_AchrUn_...	Banana	cytosol, golgi	33.7	4.72

Protein Annotations

MapMan:1.1.4.2.2	Gene3D:1.20.1130.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009522	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	InterPro:IPR036408	HAMAP:MF_00482	PFAM:PF00223	PIRSF:PIRSF002905	PRINTS:PR00257
ScanProsite:PS00419	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_CS	InterPro:PSI_PsaA/B_sf	InterPro:PSI_PsaB	PANTHER:PTHR30128
PANTHER:PTHR30128:SF4	SUPFAM:SSF81558	TIGRFAMs:TIGR01336	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1D01G181100	EnsemblPlants:TraesCS1D01G181100.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:254463783..254465986

Molecular Weight (calculated)

82499.6 Da

IEP (calculated)

7.082

GRAVY (calculated)

0.087

Length

733 amino acids

Sequence
(BLAST)

001: MELRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFTSH FGQLAIIFLW TSGNLFHVAW QGNFESWIQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAA GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSMLSL IAGWLHLQPK WKPSLSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYIRWN NFLDVLPYPQ GLGPLLTGQW NLYGQNPDSS NHLFGTAQGA GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AFIFLIAGHM YRTNFGIGHS
301: IKDLLEAHTP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HIYSLPPYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AFFIRDYNPE
401: QNEDNVLARM LDHKDAIISH LSWASLFLGF HTLGLYVHND VMLAFGTPEK QILIEPIFAQ WIQSAHGKTT YGFDILLSST NGPAFNAGRS LWFPGWLNAV
501: NENSNSLFLT IGPGDFLVHH AIALGLHTTT LILVKGALDA RGSKLMPDKK DFGYSFPCDG PGRGGTCDIS AWDTFYLAIF WMLNTIGWVT FYWHWKHIAL
601: WQGNVSQFNE SSTYLMGWLR DYLWLNSSEL INGYNPFGMN SLSAWAWMFL FGHLVWATGF MFLISWRGYW QELIETLAWA HERTPLANLI RWRDKPVALS
701: SVQARLVGLA HFSVGYIFTY AAFLIASTSG KFG

Best Arabidopsis Sequence Match ( ATCG00340.1 )
(BLAST)

001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG

Arabidopsis Description

PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.