Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 1
- mitochondrion 2
- plasma membrane 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plasma membrane:
27800704
extracellular: 28232208 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os07t0275100-00 | plastid |
Os07t0275801-00 | plastid |
Os07t0275901-00 | plastid |
Os12t0564400-01 | plastid |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
AGP50754 | Barley | plastid | 99.05 | 99.05 |
HORVU6Hr1G049190.1 | Barley | golgi, mitochondrion, peroxisome, plasma membrane | 99.05 | 99.05 |
TraesCS2B01G487400.1 | Wheat | plastid | 98.37 | 98.37 |
TraesCS1D01G181100.1 | Wheat | golgi, mitochondrion, peroxisome, plasma membrane | 97.0 | 97.14 |
ATCG00340.1 | Thale cress | golgi, mitochondrion, plasma membrane, plastid | 96.73 | 96.73 |
HORVU3Hr1G004700.1 | Barley | plastid | 55.59 | 90.07 |
HORVU5Hr1G064630.2 | Barley | plastid | 56.4 | 89.03 |
HORVU1Hr1G038010.4 | Barley | plastid | 51.5 | 86.9 |
Solyc12g032990.1.1 | Tomato | plastid | 21.12 | 85.64 |
KRH37800 | Soybean | endoplasmic reticulum, plasma membrane | 21.25 | 84.32 |
Solyc12g032980.1.1 | Tomato | nucleus | 14.71 | 82.44 |
VIT_18s0001g08620.t01 | Wine grape | cytosol | 22.62 | 67.48 |
CDY39485 | Canola | mitochondrion, plastid | 38.01 | 41.15 |
HORVU4Hr1G045300.1 | Barley | cytosol | 27.25 | 35.65 |
CAA33996 | Rice | plasma membrane | 35.01 | 34.27 |
GSMUA_AchrUn_... | Banana | cytosol, golgi | 34.06 | 4.78 |
Protein Annotations
MapMan:1.1.4.2.2 | Gene3D:1.20.1130.10 | EntrezGene:3131407 | ProteinID:AAS46120.1 | ProteinID:ABF59862.1 | ProteinID:AJC99312.1 |
ProteinID:AJC99401.1 | EnsemblPlants:CAA33995 | EnsemblPlantsGene:CAA33995 | ProteinID:CAA33995 | ProteinID:CAA33995.1 | GO:GO:0000287 |
GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 |
GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 |
GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 |
GO:GO:0016168 | GO:GO:0016491 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0022900 | GO:GO:0046872 |
GO:GO:0051536 | GO:GO:0051539 | GO:GO:0055114 | InterPro:IPR036408 | HAMAP:MF_00482 | RefSeq:NP_039382.1 |
UniProt:P0C358 | PFAM:PF00223 | PIRSF:PIRSF002905 | PRINTS:PR00257 | ScanProsite:PS00419 | InterPro:PSI_PsaA/B |
InterPro:PSI_PsaA/B_CS | InterPro:PSI_PsaA/B_sf | InterPro:PSI_PsaB | PANTHER:PTHR30128 | PANTHER:PTHR30128:SF4 | MetaCyc:PWY-101 |
UniProt:Q1G1M8 | SUPFAM:SSF81558 | TIGRFAMs:TIGR01336 | TMHMM:TMhelix | UniParc:UPI00001324B8 | SEG:seg |
Description
psaBPSI P700 apoprotein A2
Coordinates
chrPt:-:36768..38972
Molecular Weight (calculated)
82564.7 Da
IEP (calculated)
7.151
GRAVY (calculated)
0.106
Length
734 amino acids
Sequence
(BLAST)
(BLAST)
001: MELRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFESWIQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAA GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSTLSL IGGWLHLQPK WKPSLSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLDVLPYPQ GLGPLLTGQW NLYAQNPDSS NHLFGTTQGA GTAILTLLGG FHPQTQSLWL TDIAHHHLAI AFIFLIAGHM YRTNFGIGHS
301: IKDLLEAHTP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPSYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT TYGFDILLSS TSGPAFNAGR TLWLPGWLNA
501: VNENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWRDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG
101: VEAFTRGGAA GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSTLSL IGGWLHLQPK WKPSLSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLDVLPYPQ GLGPLLTGQW NLYAQNPDSS NHLFGTTQGA GTAILTLLGG FHPQTQSLWL TDIAHHHLAI AFIFLIAGHM YRTNFGIGHS
301: IKDLLEAHTP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPSYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT TYGFDILLSS TSGPAFNAGR TLWLPGWLNA
501: VNENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWRDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG
001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG
Arabidopsis Description
PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.