CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
golgi 1
mitochondrion 2
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 15682463
plastid: 16758444

msms PMID: 16758444 doi

B Granvogl, V Reisinger, LA Eichacker

Department für Biologie I, Ludwig-Maximilians-Universität, München, Germany.

msms PMID: 15682463 doi

C Ciambella, P Roepstorff, EM Aro, L Zolla

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G022750.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00340.1	HORVU5Hr1G022750.1	AT4G15510.1	23221595
ATCG00340.1	HORVU5Hr1G022750.1	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G049190.1	Barley	golgi, mitochondrion, peroxisome, plasma membrane	100.0	100.0
CAA33995	Rice	plasma membrane	99.05	99.05
TraesCS1D01G181100.1	Wheat	golgi, mitochondrion, peroxisome, plasma membrane	97.68	97.82
ATCG00340.1	Thale cress	golgi, mitochondrion, plasma membrane, plastid	96.59	96.59
HORVU3Hr1G004700.1	Barley	plastid	56.27	91.17
HORVU5Hr1G064630.2	Barley	plastid	57.08	90.11
HORVU1Hr1G038010.4	Barley	plastid	52.18	88.05
Solyc12g032990.1.1	Tomato	plastid	21.12	85.64
HORVU4Hr1G045260.1	Barley	cytosol	15.67	83.94
Solyc12g032980.1.1	Tomato	nucleus	14.71	82.44
HORVU0Hr1G029730.1	Barley	endoplasmic reticulum	12.94	73.64
HORVU2Hr1G022470.1	Barley	cytosol, plastid	3.68	51.92
HORVU3Hr1G004680.1	Barley	cytosol, plasma membrane, plastid	23.16	38.37
HORVU4Hr1G045310.1	Barley	extracellular	18.12	36.54
HORVU4Hr1G045300.1	Barley	cytosol	27.52	36.01
AGP50755	Barley	plastid	35.69	34.93
HORVU6Hr1G049200.2	Barley	cytosol, plasma membrane, plastid	35.69	34.93
HORVU5Hr1G064640.2	Barley	cytosol, plasma membrane, plastid	35.56	34.8
HORVU6Hr1G037020.1	Barley	plastid	8.86	29.55
GSMUA_AchrUn_...	Banana	cytosol, golgi	33.92	4.76
HORVU0Hr1G034550.1	Barley	cytosol	0.0	0.0

Protein Annotations

MapMan:1.1.4.2.2	Gene3D:1.20.1130.10	EntrezGene:4525131	EnsemblPlants:AGP50754	EnsemblPlantsGene:AGP50754	ProteinID:AGP50754
ProteinID:AGP50754.1	ProteinID:AMA20245.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009522	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0016491	GO:GO:0018298	GO:GO:0019538	GO:GO:0022900	GO:GO:0046872
GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	InterPro:IPR036408	ENA:KC912687.1:CDS:complement(36855..39059)	HAMAP:MF_00482
PFAM:PF00223	PIRSF:PIRSF002905	PRINTS:PR00257	ScanProsite:PS00419	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_CS
InterPro:PSI_PsaA/B_sf	InterPro:PSI_PsaB	PANTHER:PTHR30128	PANTHER:PTHR30128:SF4	MetaCyc:PWY-101	GO:S4YYJ5
UniProt:S4YYJ5	SUPFAM:SSF81558	TIGRFAMs:TIGR01336	TMHMM:TMhelix	UniParc:UPI0000E8A892	RefSeq:YP_874652.1
SEG:seg	:	:	:	:	:

Description

psaBphotosystem I P700 apoprotein A2

Coordinates

chrPt:-:36855..39059

Molecular Weight (calculated)

82619.8 Da

IEP (calculated)

7.151

GRAVY (calculated)

0.103

Length

734 amino acids

Sequence
(BLAST)

001: MELRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFESWIQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAA GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSTLSL IASWLHLQPK WKPSLSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLDVLPYPQ GLGPLLTGQW NLYAQNPDSS NHLFGTAQGA GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AFIFLIAGHM YRTNFGIGHS
301: IKDLLEAHTP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPPYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT TYGFDILLSS TNGPAFNAGR SLWLPGWLNA
501: VNENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWRDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG

Best Arabidopsis Sequence Match ( ATCG00340.1 )
(BLAST)

001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG

Arabidopsis Description

PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.