Factsheet for VIT_18s0001g08620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0060g00850.t01	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00340.1	VIT_14s0060g00850.t01	AT4G15510.1	23221595
ATCG00340.1	VIT_14s0060g00850.t01	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g062600.1.1	Tomato	cytosol, nucleus, plastid	33.74	83.84
HORVU0Hr1G029730.1	Barley	endoplasmic reticulum	36.99	70.54
KRH37800	Soybean	endoplasmic reticulum, plasma membrane	51.63	68.65
Solyc07g021240.1.1	Tomato	cytoskeleton, cytosol, plastid	41.06	59.76
ATCG00340.1	Thale cress	golgi, mitochondrion, plasma membrane, plastid	68.29	22.89
CAA33995	Rice	plasma membrane	67.48	22.62
TraesCS2B01G487400.1	Wheat	plastid	66.67	22.34
TraesCS1D01G181100.1	Wheat	golgi, mitochondrion, peroxisome, plasma membrane	65.85	22.1
CDY39485	Canola	mitochondrion, plastid	43.09	15.63
GSMUA_AchrUn_...	Banana	cytosol, golgi	25.2	1.19

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	ProteinID:CBI19362	ProteinID:CBI19362.3	UniProt:E0CNY4	EMBL:FN595227
GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009522	GO:GO:0009535
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0016491	GO:GO:0018298	GO:GO:0019538	GO:GO:0022900
GO:GO:0046872	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	InterPro:IPR036408	PFAM:PF00223
PFAM:PF05695	PRINTS:PR00257	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF4
SUPFAM:SSF81558	TMHMM:TMhelix	UniParc:UPI0001BE17B4	InterPro:Uncharacterised_Ycf2	ArrayExpress:VIT_18s0001g08620	EnsemblPlantsGene:VIT_18s0001g08620
EnsemblPlants:VIT_18s0001g08620.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:7060607..7061347

Molecular Weight (calculated)

27810.4 Da

IEP (calculated)

6.894

GRAVY (calculated)

-0.084

Length

246 amino acids

Sequence
(BLAST)

001: MKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYTF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
101: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPYLQ NTVSIHPISS DPGCDMVPKD EPDMNSSNKI SFLNKNPFFD
201: LFHLFHDRNR GDTRYTTILN QNPKLLKNKI FLLYLSLNLY QGTLNS

Best Arabidopsis Sequence Match ( ATCG00340.1 )
(BLAST)

001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG

Arabidopsis Description

PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.