CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96702	plastid
KRH68425	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00340.1	KRG96702	AT4G15510.1	23221595
ATCG00340.1	KRH68425	AT4G15510.1	23221595
ATCG00340.1	KRG96702	AT4G15510.1	23221595
ATCG00340.1	KRH68425	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g062600.1.1	Tomato	cytosol, nucleus, plastid	39.46	73.74
HORVU0Hr1G029730.1	Barley	endoplasmic reticulum	49.19	70.54
VIT_18s0001g08620.t01	Wine grape	cytosol	68.65	51.63
KRH55005	Soybean	cytosol, plasma membrane	22.7	45.65
Solyc07g021240.1.1	Tomato	cytoskeleton, cytosol, plastid	41.08	44.97
KRG88966	Soybean	cytosol, plastid	23.24	34.68
CAA33995	Rice	plasma membrane	84.32	21.25
TraesCS2B01G487400.1	Wheat	plastid	83.78	21.12
ATCG00340.1	Thale cress	golgi, mitochondrion, plasma membrane, plastid	82.7	20.84
TraesCS1D01G181100.1	Wheat	golgi, mitochondrion, peroxisome, plasma membrane	81.62	20.6
CDY39485	Canola	mitochondrion, plastid	38.38	10.47
KRH49261	Soybean	cytosol, mitochondrion	2.16	3.48
KRH38575	Soybean	cytosol, plasma membrane, plastid	1.08	2.02
GSMUA_AchrUn_...	Banana	cytosol, golgi	47.57	1.68

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	EMBL:ACUP02005512	EnsemblPlantsGene:GLYMA_09G090100	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0016491	GO:GO:0018298	GO:GO:0019538	GO:GO:0046872	GO:GO:0051536	GO:GO:0051539
GO:GO:0055114	InterPro:IPR036408	UniProt:K7LCP6	EnsemblPlants:KRH37800	ProteinID:KRH37800	ProteinID:KRH37800.1
PFAM:PF00223	PRINTS:PR00257	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF4
MetaCyc:PWY-101	SUPFAM:SSF81558	TMHMM:TMhelix	UniParc:UPI000295D979	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:-:12086685..12087991

Molecular Weight (calculated)

20785.2 Da

IEP (calculated)

9.316

GRAVY (calculated)

0.146

Length

185 amino acids

Sequence
(BLAST)

001: LSGFHPDLTL LSFLLWLSIA FIFLVAGHMY RTNFGIGHSI KDLLEAHTPP GGRLGRGHKG LYDTINNSIH FQLGLALASL GVITSLVAQH MYSLPAYAFI
101: AQDFTTQVAL YTHHQYIAGF IMTGPFAHGA IFFIRDYNPE QNEDNVLARM LDHKEAIISH LSWASLFLGF HKRPKQHQIP RAFSK

Best Arabidopsis Sequence Match ( ATCG00340.1 )
(BLAST)

001: MALRFPRFSQ GLAQDPTTRR IWFGIATAHD FESHDDITEE RLYQNIFASH FGQLAIIFLW TSGNLFHVAW QGNFETWVQD PLHVRPIAHA IWDPHFGQPA
101: VEAFTRGGAL GPVNIAYSGV YQWWYTIGLR TNEDLYTGAL FLLFLSALSL IGGWLHLQPK WKPRVSWFKN AESRLNHHLS GLFGVSSLAW TGHLVHVAIP
201: ASRGEYVRWN NFLNVLPHPQ GLGPLFTGQW NLYAQNPDSS SHLFGTSQGS GTAILTLLGG FHPQTQSLWL TDMAHHHLAI AILFLIAGHM YRTNFGIGHS
301: IKDLLEAHIP PGGRLGRGHK GLYDTINNSI HFQLGLALAS LGVITSLVAQ HMYSLPAYAF IAQDFTTQAA LYTHHQYIAG FIMTGAFAHG AIFFIRDYNP
401: EQNEDNVLAR MLDHKEAIIS HLSWASLFLG FHTLGLYVHN DVMLAFGTPE KQILIEPIFA QWIQSAHGKT SYGFDVLLSS TSGPAFNAGR SIWLPGWLNA
501: INENSNSLFL TIGPGDFLVH HAIALGLHTT TLILVKGALD ARGSKLMPDK KDFGYSFPCD GPGRGGTCDI SAWDAFYLAV FWMLNTIGWV TFYWHWKHIT
601: LWQGNVSQFN ESSTYLMGWL RDYLWLNSSQ LINGYNPFGM NSLSVWAWMF LFGHLVWATG FMFLISWRGY WQELIETLAW AHERTPLANL IRWKDKPVAL
701: SIVQARLVGL AHFSVGYIFT YAAFLIASTS GKFG

Arabidopsis Description

PSABPhotosystem I P700 chlorophyll a apoprotein A2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U2]
SUBAcon: [mitochondrion,plasma membrane,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.