CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96702	plastid
KRH24811
KRH29812
KRH68425	plastid
KRH76682

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00350.1	KRH76682	AT1G75630.2	22897245
ATCG00350.1	KRH24811	AT2G28800.1	15988575
ATCG00350.1	KRH29812	AT2G28800.1	15988575
ATCG00350.1	KRG96702	AT4G15510.1	23221595
ATCG00350.1	KRH68425	AT4G15510.1	23221595
ATCG00350.1	KRG96702	AT4G15510.1	23221595
ATCG00350.1	KRH68425	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43223	Canola	extracellular	69.35	57.33
KRH49261	Soybean	cytosol, mitochondrion	24.19	26.09
KRH37800	Soybean	endoplasmic reticulum, plasma membrane	34.68	23.24
ATCG00350.1	Thale cress	cytosol, plasma membrane, plastid	91.13	15.07
KRH55005	Soybean	cytosol, plasma membrane	6.45	8.7
TraesCS1B01G189100.1	Wheat	cytosol, plasma membrane, plastid	1.61	1.07
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	0.0	0.0
HORVU6Hr1G037020.1	Barley	plastid	0.0	0.0
KRH38575	Soybean	cytosol, plasma membrane, plastid	0.0	0.0
PGSC0003DMT400041230	Potato	plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	UniProt:A0A0R0E533	EnsemblPlantsGene:GLYMA_U016600	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0016491	GO:GO:0018298	GO:GO:0019538	GO:GO:0046872	GO:GO:0051536	GO:GO:0051539
GO:GO:0055114	InterPro:IPR036408	EnsemblPlants:KRG88966	ProteinID:KRG88966	ProteinID:KRG88966.1	PFAM:PF00223
PRINTS:PR00257	InterPro:PSI_PsaA	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF8
MetaCyc:PWY-101	SUPFAM:SSF81558	TMHMM:TMhelix	UniParc:UPI0006EDB048	SEG:seg	:

Description

hypothetical protein

Coordinates

chrscaffold_21:-:2631105..2631479

Molecular Weight (calculated)

13771.8 Da

IEP (calculated)

7.422

GRAVY (calculated)

0.334

Length

124 amino acids

Sequence
(BLAST)

001: PHLLAQLYSS FAEGATPLFT LNWSKYAEFL TFRGGLDPVT GGLWLTDIIH HHLAIAILFL IAGHMYRTNW GIGHSIKDIL EAHKGPFMGQ GHKGLYEILT
101: TSWHAQLSIN LVMLGSLTII VAHQ

Best Arabidopsis Sequence Match ( ATCG00350.1 )
(BLAST)

001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG

Arabidopsis Description

PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.