Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- extracellular 3
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025781.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 96.95 | 96.36 |
| AT1G19910.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 96.95 | 96.36 |
| EES15730 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 96.34 | 95.76 |
| KXG23066 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 96.34 | 95.76 |
| Zm00001d053010_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 95.73 | 95.15 |
| Zm00001d023542_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 95.73 | 95.15 |
| Zm00001d004821_P002 | Maize | extracellular | 95.73 | 95.15 |
| TraesCS5D01G130000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 95.73 | 95.15 |
| EES09364 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 95.73 | 95.15 |
| TraesCS5B01G117600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 95.73 | 95.15 |
| TraesCS1A01G019000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 95.73 | 95.15 |
| TraesCS5A01G118600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 95.73 | 95.15 |
| TraesCS1D01G018300.1 | Wheat | golgi | 95.73 | 95.15 |
| Os12t0168900-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 95.12 | 94.55 |
| TraesCS4A01G206900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 95.12 | 94.55 |
| TraesCS4B01G110500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 95.12 | 94.55 |
| TraesCS4D01G108200.1 | Wheat | golgi | 95.12 | 94.55 |
| HORVU4Hr1G019840.1 | Barley | vacuole | 95.12 | 94.55 |
| HORVU1Hr1G002500.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 95.12 | 94.55 |
| Os02t0550100-01 | Rice | nucleus | 95.73 | 94.01 |
| Os05t0106100-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 95.12 | 93.98 |
| Os11t0169900-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 94.51 | 93.94 |
| TraesCS1B01G022800.1 | Wheat | endoplasmic reticulum | 92.68 | 92.12 |
| Zm00001d041882_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 95.12 | 90.7 |
| Zm00001d035702_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 70.73 | 83.45 |
| Os01t0962300-00 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 82.93 | 82.42 |
| AT1G75630.2 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 97.56 | 80.0 |
| HORVU5Hr1G036250.1 | Barley | plastid | 84.15 | 76.24 |
| Bra007980.1-P | Field mustard | cytosol | 54.88 | 73.17 |
| Bra012197.1-P | Field mustard | plastid | 73.17 | 64.52 |
| KXG21044 | Sorghum | extracellular | 46.95 | 63.64 |
| Zm00001d002976_P001 | Maize | extracellular, plastid | 34.15 | 57.14 |
| KRG89360 | Soybean | extracellular | 37.8 | 46.62 |
| GSMUA_Achr3P19110_001 | Banana | plasma membrane | 13.41 | 42.31 |
| KRH05091 | Soybean | golgi, plasma membrane, plastid | 32.32 | 30.11 |
| KRH16027 | Soybean | golgi, plasma membrane, plastid | 32.32 | 30.11 |
| CDY54164 | Canola | plasma membrane | 57.93 | 22.78 |
Protein Annotations
| Gene3D:1.20.120.610 | EntrezGene:100779290 | MapMan:24.1.1.1.2 | EMBL:ACUP02000636 | InterPro:ATPase_proteolipid_c-like_dom | InterPro:ATPase_proteolipid_csu |
| InterPro:ATPase_proteolipid_su_C_euk | InterPro:F/V-ATP_Csub_sf | EnsemblPlantsGene:GLYMA_01G168000 | GO:GO:0000220 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005774 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0007035 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0015078 | GO:GO:0015991 | GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0019725 | GO:GO:0033177 | GO:GO:0033179 | GO:GO:0046961 | UniProt:I1J8N1 | EnsemblPlants:KRH76682 |
| ProteinID:KRH76682 | ProteinID:KRH76682.1 | PFAM:PF00137 | PRINTS:PR00122 | PANTHER:PTHR10263 | PANTHER:PTHR10263:SF13 |
| SUPFAM:SSF81333 | TIGRFAMs:TIGR01100 | TMHMM:TMhelix | UniParc:UPI0002336C9E | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr1:+:50564671..50566627
Molecular Weight (calculated)
16514.7 Da
IEP (calculated)
8.679
GRAVY (calculated)
0.955
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGFSGDETA PFFGFLGAAA ALVFSCMGAA YGTAKSGVGV ASMGVMRPEL VMKSIVPVVM AGVLGIYGLI IAVIISTGIN PKAKSYYLFD GYAHLSSGLS
101: CGLAGLSAGM AIGIVGDAGV RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ SRAD
101: CGLAGLSAGM AIGIVGDAGV RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ SRAD
001: MASSGFSGDE TAPFFGFLGA AAALVFSCMG AAYGTAKSGV GVASMGVMRP ELVMKSIVPV VMAGVLGIYG LIIAVIISTG INPKAKSYYL FDGYAHLSSG
101: LACGLAGLSA GMAIGIVGDA GVRANAQQPK LFVGMILILI FAEALALYGL IVGIILSSRA GQSRAE
101: LACGLAGLSA GMAIGIVGDA GVRANAQQPK LFVGMILILI FAEALALYGL IVGIILSSRA GQSRAE
Arabidopsis Description
AVA-P4V-type proton ATPase proteolipid subunit [Source:UniProtKB/TrEMBL;Acc:F4HZ57]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.