Factsheet for Zm00001d023542_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
vacuole 6
extracellular 3
endoplasmic reticulum 4
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001
Zm00001d053306_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16510.1	Zm00001d000055_P001	AT2G01950.1	19000166
AT2G16510.1	Zm00001d053306_P001	AT4G32750.1	21798944
AT4G34720.1	Zm00001d000055_P001	AT2G01950.1	19000166
AT4G34720.1	Zm00001d053306_P001	AT4G32750.1	21798944
AT4G38920.1	Zm00001d000055_P001	AT2G01950.1	19000166
AT4G38920.1	Zm00001d053306_P001	AT4G32750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053010_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
TraesCS5A01G118600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
Zm00001d004821_P002	Maize	extracellular	100.0	100.0
TraesCS5D01G130000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
TraesCS5B01G117600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
KXG23066	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	98.79	98.79
EES15730	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	98.79	98.79
AT1G19910.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	96.36	96.36
AT2G16510.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.76	96.34
AT4G34720.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.76	96.34
AT4G38920.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.76	96.34
VIT_18s0001g02650.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	95.76	96.34
VIT_03s0038g00790.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	95.76	96.34
Bra025781.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	95.76	95.76
KRH76682	Soybean	nucleus	95.15	95.73
VIT_18s0001g13630.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.73
Solyc04g081090.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.15
Zm00001d041882_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	98.79	94.77
Zm00001d035702_P001	Maize	endoplasmic reticulum, extracellular, vacuole	72.12	85.61
AT1G75630.2	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	96.36	79.5
HORVU5Hr1G036250.1	Barley	plastid	86.06	78.45
Bra007980.1-P	Field mustard	cytosol	52.73	70.73
VIT_18s0001g15790.t01	Wine grape	cytosol	39.39	65.66
Bra012197.1-P	Field mustard	plastid	71.52	63.44
CDY13486	Canola	endoplasmic reticulum, extracellular, vacuole	44.85	59.2
Bra023950.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	44.85	59.2
Bra010688.1-P	Field mustard	extracellular	28.48	57.32
Zm00001d002976_P001	Maize	extracellular, plastid	33.94	57.14
CDY09753	Canola	endoplasmic reticulum, extracellular	43.64	54.96
CDX93877	Canola	endoplasmic reticulum	43.03	51.82
KRG89360	Soybean	extracellular	37.58	46.62
CDX99447	Canola	cytosol, vacuole	46.06	40.64
GSMUA_Achr3P19110_001	Banana	plasma membrane	12.73	40.38
Zm00001d011321_P002	Maize	peroxisome, plasma membrane, plastid	33.94	31.82
Zm00001d044445_P001	Maize	peroxisome, plasma membrane, plastid	33.94	31.82
CDY54164	Canola	plasma membrane	56.36	22.3

Protein Annotations

Gene3D:1.20.120.610	EntrezGene:100280656	EntrezGene:100282817	MapMan:24.1.1.1.2	ProteinID:AQK39533.1	ProteinID:AQK58548.1
InterPro:ATPase_proteolipid_c-like_dom	InterPro:ATPase_proteolipid_csu	InterPro:ATPase_proteolipid_su_C_euk	UniProt:B6SK76	EMBL:BT053823	EMBL:BT060757
EMBL:BT068820	EMBL:EU953141	EMBL:EU959288	EMBL:EU959913	EMBL:EU962394	InterPro:F/V-ATP_Csub_sf
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015078
GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0033177	GO:GO:0033179
ProteinID:ONM19639.1	PFAM:PF00137	PRINTS:PR00122	PANTHER:PTHR10263	PANTHER:PTHR10263:SF14	SUPFAM:SSF81333
TIGRFAMs:TIGR01100	TMHMM:TMhelix	UniParc:UPI000009D148	EnsemblPlantsGene:Zm00001d023542	EnsemblPlants:Zm00001d023542_P001	EnsemblPlants:Zm00001d023542_T001
SEG:seg	:	:	:	:	:

Description

vacuolar proton pump4V-type proton ATPase subunit c4

Coordinates

chr10:-:9508219..9510847

Molecular Weight (calculated)

16637.9 Da

IEP (calculated)

8.679

GRAVY (calculated)

0.984

Length

165 amino acids

Sequence
(BLAST)

001: MSSVFSGDET APFFGFLGAA AALVFSCMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV MAGVLGIYGL IIAVIISTGI NPKAKPYYLF DGYAHLSSGL
101: ACGLAGLAAG MAIGIVGDAG VRANAQQPKL FVGMILILIF AEALALYGLI VGIILSSRAG QSRAD

Best Arabidopsis Sequence Match ( AT1G19910.1 )
(BLAST)

001: MASTFSGDET APFFGFLGAA AALVFSCMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV MAGVLGIYGL IIAVIISTGI NPKAKSYYLF DGYAHLSSGL
101: ACGLAGLSAG MAIGIVGDAG VRANAQQPKL FVGMILILIF AEALALYGLI VGIILSSRAG QSRAE

Arabidopsis Description

VHA-C2V-type proton ATPase proteolipid subunit [Source:UniProtKB/TrEMBL;Acc:A0A178W2T3]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.