CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH52686
KRH58580
KRH62026

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16510.1	KRH42483	AT2G01950.1	19000166
AT2G16510.1	KRH58580	AT2G01950.1	19000166
AT2G16510.1	KRH52686	AT4G32750.1	21798944
AT2G16510.1	KRH62026	AT4G32750.1	21798944
AT4G34720.1	KRH42483	AT2G01950.1	19000166
AT4G34720.1	KRH58580	AT2G01950.1	19000166
AT4G34720.1	KRH52686	AT4G32750.1	21798944
AT4G34720.1	KRH62026	AT4G32750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035702_P001	Maize	endoplasmic reticulum, extracellular, vacuole	46.62	44.6
AT4G34720.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	47.37	38.41
VIT_03s0038g00790.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	47.37	38.41
AT2G16510.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	47.37	38.41
Os11t0169900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	47.37	38.18
Os05t0106100-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	47.37	37.95
KRH76682	Soybean	nucleus	46.62	37.8
EES09364	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	46.62	37.58
Zm00001d053010_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	46.62	37.58
Zm00001d023542_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	46.62	37.58
Zm00001d004821_P002	Maize	extracellular	46.62	37.58
TraesCS5D01G130000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	46.62	37.58
TraesCS5B01G117600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	46.62	37.58
TraesCS5A01G118600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	46.62	37.58
TraesCS4D01G108200.1	Wheat	golgi	46.62	37.58
TraesCS4B01G110500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	46.62	37.58
TraesCS4A01G206900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	46.62	37.58
TraesCS1D01G018300.1	Wheat	golgi	46.62	37.58
TraesCS1A01G019000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	46.62	37.58
Os12t0168900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	46.62	37.58
KXG23066	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	46.62	37.58
EES15730	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	46.62	37.58
HORVU1Hr1G002500.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	46.62	37.58
HORVU4Hr1G019840.1	Barley	vacuole	46.62	37.58
Os02t0550100-01	Rice	nucleus	46.62	37.13
Solyc04g081090.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	45.86	36.97
TraesCS1B01G022800.1	Wheat	endoplasmic reticulum	45.86	36.97
Zm00001d041882_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	46.62	36.05
Os01t0962300-00	Rice	endoplasmic reticulum, plasma membrane, vacuole	39.1	31.52
HORVU5Hr1G036250.1	Barley	plastid	42.11	30.94
Zm00001d002976_P001	Maize	extracellular, plastid	22.56	30.61
CDY13486	Canola	endoplasmic reticulum, extracellular, vacuole	26.32	28.0
CDX93877	Canola	endoplasmic reticulum	28.57	27.74
CDY09753	Canola	endoplasmic reticulum, extracellular	25.56	25.95
KXG21044	Sorghum	extracellular	22.56	24.79
Bra010688.1-P	Field mustard	extracellular	14.29	23.17
CDX99447	Canola	cytosol, vacuole	29.32	20.86
KRH05091	Soybean	golgi, plasma membrane, plastid	18.8	14.2
KRH16027	Soybean	golgi, plasma membrane, plastid	18.8	14.2

Protein Annotations

Gene3D:1.20.120.610	MapMan:35.1	EMBL:ACUP02012206	InterPro:ATPase_proteolipid_c-like_dom	InterPro:ATPase_proteolipid_csu	EnsemblPlantsGene:GLYMA_20G018700
GO:GO:0000220	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006811	GO:GO:0007035
GO:GO:0008150	GO:GO:0009987	GO:GO:0015078	GO:GO:0015991	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019725	GO:GO:0033177	GO:GO:0033179	GO:GO:0046961	UniProt:K7N0U1
EnsemblPlants:KRG89360	ProteinID:KRG89360	ProteinID:KRG89360.1	PFAM:PF00137	PRINTS:PR00122	PANTHER:PTHR10263
PANTHER:PTHR10263:SF21	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002956330	:	:

Description

hypothetical protein

Coordinates

chr20:+:1939627..1942984

Molecular Weight (calculated)

14066.7 Da

IEP (calculated)

8.980

GRAVY (calculated)

0.598

Length

133 amino acids

Sequence
(BLAST)

001: MIQLCFGGFF GAMVLLDSIK LLQIVDLVLH INSGMGATYG TTKSGVGVAS IGVMRSELVM KSIVPVVMAQ LSSGLACGLV GLSAGMAIGI VGNAGVRMGR
101: RESKHVYHHS NLWCCEDKVP TNKGWPNLIV TYL

Best Arabidopsis Sequence Match ( AT4G34720.2 )
(BLAST)

001: MLLGMGAAYG TAKSGVGVAS MGVMRPELVM KSIVPVVMAG VLGIYGLIIA VIISTGINPK AKSYYLFDGY AHLSSGLACG LAGLSAGMAI GIVGDAGVRA
101: NAQQPKLFVG MILILIFAEA LALYGLIVGI ILSSRAGQSR AE

Arabidopsis Description

VHA-c3V-type proton ATPase subunit c1 [Source:UniProtKB/Swiss-Prot;Acc:P0DH92]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.