CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

plastid 2
mitochondrion 1
endoplasmic reticulum 3
vacuole 4
extracellular 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72369
CDX75281
CDY03088
CDY13500
CDY17621
CDY45015
CDY49321

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16510.1	CDY03088	AT2G01950.1	19000166
AT2G16510.1	CDY17621	AT2G01950.1	19000166
AT2G16510.1	CDX72369	AT4G32750.1	21798944
AT2G16510.1	CDX75281	AT4G32750.1	21798944
AT2G16510.1	CDY13500	AT4G32750.1	21798944
AT2G16510.1	CDY45015	AT4G32750.1	21798944
AT2G16510.1	CDY49321	AT4G32750.1	21798944
AT4G34720.1	CDY03088	AT2G01950.1	19000166
AT4G34720.1	CDY17621	AT2G01950.1	19000166
AT4G34720.1	CDX72369	AT4G32750.1	21798944
AT4G34720.1	CDX75281	AT4G32750.1	21798944
AT4G34720.1	CDY13500	AT4G32750.1	21798944
AT4G34720.1	CDY45015	AT4G32750.1	21798944
AT4G34720.1	CDY49321	AT4G32750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023950.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	100.0	100.0
VIT_18s0001g15790.t01	Wine grape	cytosol	48.8	61.62
Zm00001d002976_P001	Maize	extracellular, plastid	44.8	57.14
Zm00001d035702_P001	Maize	endoplasmic reticulum, extracellular, vacuole	61.6	55.4
CDX93877	Canola	endoplasmic reticulum	54.4	49.63
CDY09753	Canola	endoplasmic reticulum, extracellular	52.0	49.62
AT4G34720.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	61.6	46.95
AT2G16510.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	61.6	46.95
TraesCS1D01G018300.1	Wheat	golgi	60.8	46.06
TraesCS1A01G019000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	60.8	46.06
Solyc04g081090.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	60.8	46.06
Os02t0550100-01	Rice	nucleus	60.8	45.51
HORVU1Hr1G002500.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	60.0	45.45
HORVU4Hr1G019840.1	Barley	vacuole	60.0	45.45
TraesCS4D01G108200.1	Wheat	golgi	60.0	45.45
TraesCS4B01G110500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	60.0	45.45
TraesCS4A01G206900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	60.0	45.45
Os05t0106100-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	60.0	45.18
TraesCS1B01G022800.1	Wheat	endoplasmic reticulum	59.2	44.85
Zm00001d053010_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	59.2	44.85
Zm00001d023542_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	59.2	44.85
Zm00001d004821_P002	Maize	extracellular	59.2	44.85
TraesCS5D01G130000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	59.2	44.85
TraesCS5B01G117600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	59.2	44.85
TraesCS5A01G118600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	59.2	44.85
EES09364	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	59.2	44.85
KXG23066	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	59.2	44.85
EES15730	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	59.2	44.85
Os12t0168900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	58.4	44.24
Os11t0169900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	57.6	43.64
Zm00001d041882_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	58.4	42.44
Os01t0962300-00	Rice	endoplasmic reticulum, plasma membrane, vacuole	56.0	42.42
CDX99447	Canola	cytosol, vacuole	50.4	33.69
HORVU5Hr1G036250.1	Barley	plastid	48.0	33.15
KRG89360	Soybean	extracellular	28.0	26.32
KXG21044	Sorghum	extracellular	23.2	23.97
CDY23329	Canola	endoplasmic reticulum, plasma membrane, vacuole	18.4	12.99
CDY39890	Canola	endoplasmic reticulum, plasma membrane, vacuole	18.4	12.99
CDX75251	Canola	endoplasmic reticulum, plasma membrane, vacuole	18.4	12.99
CDX68854	Canola	endoplasmic reticulum, plasma membrane, vacuole	18.4	12.99
CDY13493	Canola	cytosol, plasma membrane, vacuole	14.4	10.91
CDY54164	Canola	plasma membrane	31.2	9.35

Protein Annotations

Gene3D:1.20.120.610	MapMan:24.1.1.1.2	GO:A0A078FK00	UniProt:A0A078FK00	InterPro:ATPase_proteolipid_c-like_dom	InterPro:ATPase_proteolipid_csu
InterPro:ATPase_proteolipid_su_C_euk	EnsemblPlants:CDY13486	ProteinID:CDY13486	ProteinID:CDY13486.1	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992
GO:GO:0016020	GO:GO:0016021	GO:GO:0033177	GO:GO:0033179	EnsemblPlantsGene:GSBRNA2T00077788001	PFAM:PF00137
PRINTS:PR00122	PANTHER:PTHR10263	PANTHER:PTHR10263:SF36	TIGRFAMs:TIGR01100	TMHMM:TMhelix	UniParc:UPI0002540FF4
SEG:seg	:	:	:	:	:

Description

BnaA03g52040DV-type proton ATPase proteolipid subunit [Source:UniProtKB/TrEMBL;Acc:A0A078FK00]

Coordinates

chrLK032035:+:616878..617986

Molecular Weight (calculated)

13195.2 Da

IEP (calculated)

9.166

GRAVY (calculated)

0.725

Length

125 amino acids

Sequence
(BLAST)

001: MSTFSGDESA RFFGFIGAAA ALVFSVLFFV SSLRSGMGAA YGTAKSGVGV ASMGVMRPEL VMQSIVPVVM AGVLGIYGLI IAVIISTEST SSYFFSKLRI
101: SGIGQYTTGW CMVRRVSYNN CLANE

Best Arabidopsis Sequence Match ( AT2G16510.1 )
(BLAST)

001: MSTFSGDETA PFFGFLGAAA ALVFSCMGAA YGTAKSGVGV ASMGVMRPEL VMKSIVPVVM AGVLGIYGLI IAVIISTGIN PKAKSYYLFD GYAHLSSGLA
101: CGLAGLSAGM AIGIVGDAGV RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ SRAE

Arabidopsis Description

VHA-c3V-type proton ATPase subunit c1 [Source:UniProtKB/Swiss-Prot;Acc:P0DH92]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.