CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 2
endoplasmic reticulum 2
extracellular 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75251	Canola	endoplasmic reticulum, plasma membrane, vacuole	99.44	99.44
CDY23329	Canola	endoplasmic reticulum, plasma membrane, vacuole	99.44	99.44
CDY39890	Canola	endoplasmic reticulum, plasma membrane, vacuole	99.44	99.44
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	89.27	90.8
Zm00001d044445_P001	Maize	peroxisome, plasma membrane, plastid	89.27	89.77
Zm00001d011321_P002	Maize	peroxisome, plasma membrane, plastid	89.27	89.77
KRH16027	Soybean	golgi, plasma membrane, plastid	89.27	89.77
KRH05091	Soybean	golgi, plasma membrane, plastid	89.27	89.77
EES01054	Sorghum	peroxisome, plasma membrane, plastid	89.27	89.77
TraesCS3D01G234100.1	Wheat	peroxisome, plasma membrane, plastid	89.27	89.27
TraesCS3B01G249000.1	Wheat	peroxisome, plasma membrane, plastid	89.27	89.27
TraesCS3A01G218100.1	Wheat	peroxisome, plasma membrane, plastid	89.27	89.27
HORVU3Hr1G053400.1	Barley	peroxisome, plasma membrane, plastid	89.27	89.27
VIT_09s0002g05720.t01	Wine grape	extracellular, mitochondrion, plasma membrane, plastid	88.7	88.7
VIT_04s0008g04760.t01	Wine grape	endoplasmic reticulum, plasma membrane	88.7	88.7
PGSC0003DMT400073491	Potato	plastid	88.7	88.7
PGSC0003DMT400019560	Potato	plastid	88.7	88.7
Solyc06g067880.2.1	Tomato	plastid	87.57	87.57
Os01t0610100-01	Rice	peroxisome, plasma membrane, plastid	87.01	87.5
AT4G32530.2	Thale cress	endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole	96.05	80.95
VIT_18s0086g00420.t01	Wine grape	extracellular, plasma membrane, plastid	27.68	77.78
GSMUA_Achr4P30710_001	Banana	extracellular, plasma membrane, plastid	88.7	70.72
HORVU3Hr1G053390.1	Barley	plastid	89.27	69.0
CDY13493	Canola	cytosol, plasma membrane, vacuole	61.02	65.45
VIT_07s0141g00500.t01	Wine grape	extracellular	27.68	65.33
GSMUA_Achr7P09940_001	Banana	golgi, plasma membrane	88.7	62.8
VIT_18s0086g00440.t01	Wine grape	plasma membrane	30.51	45.76
VIT_19s0014g04830.t01	Wine grape	plasma membrane	33.9	41.67
CDY13486	Canola	endoplasmic reticulum, extracellular, vacuole	12.99	18.4
CDX99447	Canola	cytosol, vacuole	14.69	13.9
CDX93877	Canola	endoplasmic reticulum	10.73	13.87
CDY09753	Canola	endoplasmic reticulum, extracellular	10.17	13.74
CDY54164	Canola	plasma membrane	17.51	7.43

Protein Annotations

Gene3D:1.20.120.610	MapMan:24.1.1.1.2	GO:A0A078BY63	InterPro:ATPase_proteolipid_c-like_dom	InterPro:ATPase_proteolipid_csu	EnsemblPlants:CDX68854
ProteinID:CDX68854	ProteinID:CDX68854.1	InterPro:F/V-ATP_Csub_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0016020	GO:GO:0033177
GO:GO:0033179	EnsemblPlantsGene:GSBRNA2T00130578001	PFAM:PF00137	PRINTS:PR00122	PANTHER:PTHR10263	PANTHER:PTHR10263:SF18
SUPFAM:SSF81333	TMHMM:TMhelix	UniParc:UPI0004EC5BB1	SEG:seg	:	:

Description

BnaC01g05990D

Coordinates

chrLK031789:-:1578697..1580783

Molecular Weight (calculated)

18158.6 Da

IEP (calculated)

6.382

GRAVY (calculated)

1.090

Length

177 amino acids

Sequence
(BLAST)

001: MSGMVDASSW GAALVRISPY TFSAIGIAIS IGVSVLGAAW GIYITGSSLI GAAIEAPRIT SKNLISVIFC EAVAIYGVIV AIILQTKLES VPTSKMYDAE
101: SLRAGYAIFA SGIIVGFANL VCGLCVGIIG SSCALSDAQN STLFVKILVI EIFGSALGLF GVIVGIIMSA QATWPTK

Best Arabidopsis Sequence Match ( AT2G25610.2 )
(BLAST)

001: MVIEFTRIHQ RVIWSCSISD RTGSVNHLLL RKTEKETNQI HSYQRDREKM SGVAIHASSW GAALVRISPY TFSAIGIAIS IGVSVLGAAW GIYITGSSLI
101: GAAIEAPRIT SKNLISVIFC EAVAIYGVIV AIILQTKLES VPSSKMYDAE SLRAGYAIFA SGIIVGFANL VCGLCVGIIG SSCALSDAQN STLFVKILVI
201: EIFGSALGLF GVIVGIIMSA QATWPTK

Arabidopsis Description

ATPase, F0/V0 complex, subunit C protein [Source:TAIR;Acc:AT2G25610]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.