Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • nucleus 1
  • endoplasmic reticulum 4
  • extracellular 4
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX72369
CDX75281
CDY03088
CDY13500
CDY17621
CDY45015
CDY49321

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G16510.1 CDY03088 AT2G01950.1 19000166
AT2G16510.1 CDY17621 AT2G01950.1 19000166
AT2G16510.1 CDX72369 AT4G32750.1 21798944
AT2G16510.1 CDX75281 AT4G32750.1 21798944
AT2G16510.1 CDY13500 AT4G32750.1 21798944
AT2G16510.1 CDY45015 AT4G32750.1 21798944
AT2G16510.1 CDY49321 AT4G32750.1 21798944
AT4G34720.1 CDY03088 AT2G01950.1 19000166
AT4G34720.1 CDY17621 AT2G01950.1 19000166
AT4G34720.1 CDX72369 AT4G32750.1 21798944
AT4G34720.1 CDX75281 AT4G32750.1 21798944
AT4G34720.1 CDY13500 AT4G32750.1 21798944
AT4G34720.1 CDY45015 AT4G32750.1 21798944
AT4G34720.1 CDY49321 AT4G32750.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_18s0001g15790.t01 Wine grape cytosol 41.22 54.55
Zm00001d002976_P001 Maize extracellular, plastid 38.93 52.04
CDY13486 Canola endoplasmic reticulum, extracellular, vacuole 49.62 52.0
Zm00001d035702_P001 Maize endoplasmic reticulum, extracellular, vacuole 54.96 51.8
AT4G34720.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 57.25 45.73
AT2G16510.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 57.25 45.73
Solyc04g081090.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 55.73 44.24
CDX93877 Canola endoplasmic reticulum 45.8 43.8
Zm00001d023542_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 54.96 43.64
Zm00001d004821_P002 Maize extracellular 54.96 43.64
Zm00001d053010_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 54.96 43.64
TraesCS5D01G130000.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 54.96 43.64
TraesCS5B01G117600.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 54.96 43.64
TraesCS5A01G118600.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 54.96 43.64
TraesCS1D01G018300.1 Wheat golgi 54.96 43.64
TraesCS1A01G019000.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 54.96 43.64
KXG23066 Sorghum endoplasmic reticulum, plasma membrane, vacuole 54.96 43.64
EES09364 Sorghum endoplasmic reticulum, plasma membrane, vacuole 54.96 43.64
EES15730 Sorghum endoplasmic reticulum, plasma membrane, vacuole 54.96 43.64
Os02t0550100-01 Rice nucleus 54.96 43.11
Os11t0169900-01 Rice endoplasmic reticulum, plasma membrane, vacuole 54.2 43.03
Os12t0168900-01 Rice endoplasmic reticulum, plasma membrane, vacuole 54.2 43.03
TraesCS4D01G108200.1 Wheat golgi 54.2 43.03
HORVU4Hr1G019840.1 Barley vacuole 54.2 43.03
TraesCS1B01G022800.1 Wheat endoplasmic reticulum 54.2 43.03
HORVU1Hr1G002500.2 Barley endoplasmic reticulum, plasma membrane, vacuole 54.2 43.03
TraesCS4A01G206900.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 54.2 43.03
TraesCS4B01G110500.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 54.2 43.03
Os05t0106100-01 Rice endoplasmic reticulum, plasma membrane, vacuole 54.2 42.77
Zm00001d041882_P002 Maize endoplasmic reticulum, plasma membrane, vacuole 54.2 41.28
Os01t0962300-00 Rice endoplasmic reticulum, plasma membrane, vacuole 50.38 40.0
HORVU5Hr1G036250.1 Barley plastid 45.04 32.6
CDX99447 Canola cytosol, vacuole 45.8 32.09
KRG89360 Soybean extracellular 25.95 25.56
KXG21044 Sorghum extracellular 22.14 23.97
CDY39890 Canola endoplasmic reticulum, plasma membrane, vacuole 13.74 10.17
CDY23329 Canola endoplasmic reticulum, plasma membrane, vacuole 13.74 10.17
CDX75251 Canola endoplasmic reticulum, plasma membrane, vacuole 13.74 10.17
CDX68854 Canola endoplasmic reticulum, plasma membrane, vacuole 13.74 10.17
CDY54164 Canola plasma membrane 26.72 8.39
CDY13493 Canola cytosol, plasma membrane, vacuole 8.4 6.67
Protein Annotations
Gene3D:1.20.120.610MapMan:24.1.1.1.2GO:A0A078FCI0UniProt:A0A078FCI0InterPro:ATPase_proteolipid_c-like_domInterPro:ATPase_proteolipid_csu
InterPro:ATPase_proteolipid_su_C_eukEnsemblPlants:CDY09753ProteinID:CDY09753ProteinID:CDY09753.1GO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005774
GO:GO:0006810GO:GO:0006811GO:GO:0008150GO:GO:0015078GO:GO:0015991GO:GO:0015992
GO:GO:0016020GO:GO:0016021GO:GO:0033177GO:GO:0033179EnsemblPlantsGene:GSBRNA2T00031450001PFAM:PF00137
PRINTS:PR00122PANTHER:PTHR10263PANTHER:PTHR10263:SF14TIGRFAMs:TIGR01100TMHMM:TMhelixUniParc:UPI0004EF194E
SEG:seg:::::
Description
BnaC07g33080DV-type proton ATPase proteolipid subunit [Source:UniProtKB/TrEMBL;Acc:A0A078FCI0]
Coordinates
chrLK031998:-:840924..841680
Molecular Weight (calculated)
13905.1 Da
IEP (calculated)
6.491
GRAVY (calculated)
0.599
Length
131 amino acids
Sequence
(BLAST)
001: MSTFSGDESA LFFGFIGAAA ALKFRLWIGP MKLTDLHVPL IGFDLTLAIF SELSVSFSDS SLGIGSDSCM GAAYGTAKSG VGVASMGVMR PELVMKSIVP
101: VVMAGVLGIY GYCCYHQYGI NPKAKSYYLF D
Best Arabidopsis Sequence Match ( AT2G16510.1 )
(BLAST)
001: MSTFSGDETA PFFGFLGAAA ALVFSCMGAA YGTAKSGVGV ASMGVMRPEL VMKSIVPVVM AGVLGIYGLI IAVIISTGIN PKAKSYYLFD GYAHLSSGLA
101: CGLAGLSAGM AIGIVGDAGV RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ SRAE
Arabidopsis Description
VHA-c3V-type proton ATPase subunit c1 [Source:UniProtKB/Swiss-Prot;Acc:P0DH92]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.