Factsheet for TraesCS4D01G108200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
plastid 1
vacuole 6
extracellular 3
endoplasmic reticulum 4
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1
TraesCS6B01G229000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16510.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT2G16510.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT2G16510.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT2G16510.1	TraesCS6B01G229000.1	AT4G32750.1	21798944
AT4G34720.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT4G34720.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT4G34720.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT4G34720.1	TraesCS6B01G229000.1	AT4G32750.1	21798944
AT4G38920.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT4G38920.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT4G38920.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT4G38920.1	TraesCS6B01G229000.1	AT4G32750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G110500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
TraesCS4A01G206900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
HORVU4Hr1G019840.1	Barley	vacuole	100.0	100.0
Zm00001d053010_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	99.39	99.39
Zm00001d004821_P002	Maize	extracellular	99.39	99.39
TraesCS5D01G130000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	99.39	99.39
EES09364	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	99.39	99.39
Os12t0168900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	98.79	98.79
TraesCS1D01G018300.1	Wheat	golgi	98.18	98.18
Os11t0169900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	98.18	98.18
AT1G19910.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.76	95.76
VIT_18s0001g02650.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.73
VIT_03s0038g00790.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.73
AT2G16510.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.73
AT4G34720.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.73
AT4G38920.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.73
Bra025781.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.15
VIT_18s0001g13630.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	94.55	95.12
KRH76682	Soybean	nucleus	94.55	95.12
Solyc04g081090.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	94.55	94.55
AT1G75630.2	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.76	79.0
Bra007980.1-P	Field mustard	cytosol	52.12	69.92
VIT_18s0001g15790.t01	Wine grape	cytosol	39.39	65.66
Bra012197.1-P	Field mustard	plastid	70.91	62.9
Bra023950.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	45.45	60.0
CDY13486	Canola	endoplasmic reticulum, extracellular, vacuole	45.45	60.0
Bra010688.1-P	Field mustard	extracellular	28.48	57.32
CDY09753	Canola	endoplasmic reticulum, extracellular	43.03	54.2
CDX93877	Canola	endoplasmic reticulum	43.03	51.82
KRG89360	Soybean	extracellular	37.58	46.62
CDX99447	Canola	cytosol, vacuole	46.06	40.64
GSMUA_Achr3P19110_001	Banana	plasma membrane	12.73	40.38
TraesCS3D01G234100.1	Wheat	peroxisome, plasma membrane, plastid	32.73	30.51
CDY54164	Canola	plasma membrane	55.76	22.06

Protein Annotations

Gene3D:1.20.120.610	MapMan:24.1.1.1.2	InterPro:ATPase_proteolipid_c-like_dom	InterPro:ATPase_proteolipid_csu	InterPro:ATPase_proteolipid_su_C_euk	InterPro:F/V-ATP_Csub_sf
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015078
GO:GO:0015991	GO:GO:0016020	GO:GO:0033177	GO:GO:0033179	PFAM:PF00137	PRINTS:PR00122
PANTHER:PTHR10263	PANTHER:PTHR10263:SF14	SUPFAM:SSF81333	TIGRFAMs:TIGR01100	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4D01G108200
EnsemblPlants:TraesCS4D01G108200.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:87714214..87716207

Molecular Weight (calculated)

16621.9 Da

IEP (calculated)

8.696

GRAVY (calculated)

1.008

Length

165 amino acids

Sequence
(BLAST)

001: MSSVFSGDET APFFGFLGAA AALVFSCMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV MAGVLGIYGL IIAVIISTGI NPKAKPYFLF DGYAHLSSGL
101: ACGLAGLAAG MAIGIVGDAG VRANAQQPKL FVGMILILIF AEALALYGLI VGIILSSRAG QSRAD

Best Arabidopsis Sequence Match ( AT1G75630.1 )
(BLAST)

001: MASSGFSGDE TAPFFGFLGA AAALVFSCMG AAYGTAKSGV GVASMGVMRP ELVMKSIVPV VMAGVLGIYG LIIAVIISTG INPKAKSYYL FDGYAHLSSG
101: LACGLAGLSA GMAIGIVGDA GVRANAQQPK LFVGMILILI FAEALALYGL IVGIILSSRA GQSRAE

Arabidopsis Description

AVA-P4V-type proton ATPase proteolipid subunit [Source:UniProtKB/TrEMBL;Acc:F4HZ57]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.