Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- vacuole 6
- extracellular 3
- golgi 3
- plasma membrane 4
- endoplasmic reticulum 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g06410.t01 | |
| VIT_04s0008g03740.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G34720.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 100.0 | 100.0 |
| AT2G16510.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 100.0 | 100.0 |
| VIT_18s0001g02650.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 100.0 | 100.0 |
| VIT_18s0001g13630.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 99.39 | 99.39 |
| Solyc04g081090.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 97.56 | 96.97 |
| EES15730 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 96.95 | 96.36 |
| KXG23066 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 96.95 | 96.36 |
| TraesCS1D01G018300.1 | Wheat | golgi | 96.95 | 96.36 |
| TraesCS1A01G019000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 96.95 | 96.36 |
| Zm00001d053010_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 96.34 | 95.76 |
| Zm00001d023542_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 96.34 | 95.76 |
| Zm00001d004821_P002 | Maize | extracellular | 96.34 | 95.76 |
| TraesCS5D01G130000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 96.34 | 95.76 |
| TraesCS5B01G117600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 96.34 | 95.76 |
| TraesCS5A01G118600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 96.34 | 95.76 |
| EES09364 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 96.34 | 95.76 |
| Os02t0550100-01 | Rice | nucleus | 96.95 | 95.21 |
| Os05t0106100-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 96.34 | 95.18 |
| HORVU1Hr1G002500.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 95.73 | 95.15 |
| HORVU4Hr1G019840.1 | Barley | vacuole | 95.73 | 95.15 |
| TraesCS4A01G206900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 95.73 | 95.15 |
| TraesCS4B01G110500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 95.73 | 95.15 |
| TraesCS4D01G108200.1 | Wheat | golgi | 95.73 | 95.15 |
| Os12t0168900-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 95.73 | 95.15 |
| Os11t0169900-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 95.12 | 94.55 |
| TraesCS1B01G022800.1 | Wheat | endoplasmic reticulum | 93.9 | 93.33 |
| Zm00001d041882_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 95.73 | 91.28 |
| Zm00001d035702_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 72.56 | 85.61 |
| Os01t0962300-00 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 84.76 | 84.24 |
| HORVU5Hr1G036250.1 | Barley | plastid | 84.76 | 76.8 |
| VIT_18s0001g15790.t01 | Wine grape | cytosol | 40.85 | 67.68 |
| KXG21044 | Sorghum | extracellular | 47.56 | 64.46 |
| Bra010688.1-P | Field mustard | extracellular | 29.88 | 59.76 |
| Zm00001d002976_P001 | Maize | extracellular, plastid | 34.76 | 58.16 |
| KRG89360 | Soybean | extracellular | 38.41 | 47.37 |
| VIT_09s0002g05720.t01 | Wine grape | extracellular, mitochondrion, plasma membrane, plastid | 32.93 | 30.51 |
| VIT_04s0008g04760.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 32.32 | 29.94 |
| VIT_18s0086g00440.t01 | Wine grape | plasma membrane | 16.46 | 22.88 |
| VIT_07s0141g00500.t01 | Wine grape | extracellular | 10.37 | 22.67 |
| VIT_18s0086g00420.t01 | Wine grape | extracellular, plasma membrane, plastid | 8.54 | 22.22 |
| VIT_19s0014g04830.t01 | Wine grape | plasma membrane | 16.46 | 18.75 |
Protein Annotations
| Gene3D:1.20.120.610 | EntrezGene:100248726 | EntrezGene:100252288 | wikigene:100252288 | MapMan:24.1.1.1.2 | UniProt:A5C5A3 |
| EMBL:AM482839 | InterPro:ATPase_proteolipid_c-like_dom | InterPro:ATPase_proteolipid_csu | InterPro:ATPase_proteolipid_su_C_euk | ProteinID:CAN62098 | ProteinID:CAN62098.1 |
| ProteinID:CBI19010 | ProteinID:CBI19010.3 | ProteinID:CBI37981 | ProteinID:CBI37981.3 | ncoils:Coil | InterPro:F/V-ATP_Csub_sf |
| EMBL:FN595227 | EMBL:FN596508 | GO:GO:0000220 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005544 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0005774 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0007035 | GO:GO:0008150 |
| GO:GO:0008219 | GO:GO:0008289 | GO:GO:0009987 | GO:GO:0015078 | GO:GO:0015991 | GO:GO:0015992 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019725 | GO:GO:0033177 | GO:GO:0033179 |
| GO:GO:0046961 | GO:GO:0060548 | EntrezGene:LOC100252288 | wikigene:LOC100252288 | PFAM:PF00137 | PRINTS:PR00122 |
| PANTHER:PTHR10263 | PANTHER:PTHR10263:SF14 | SUPFAM:SSF81333 | TIGR:TC62043 | TIGR:TC63198 | TIGRFAMs:TIGR01100 |
| TMHMM:TMhelix | UniParc:UPI0000138E62 | ArrayExpress:VIT_03s0038g00790 | EnsemblPlantsGene:VIT_03s0038g00790 | EnsemblPlants:VIT_03s0038g00790.t01 | RefSeq:XP_002285861.1 |
| RefSeq:XP_010647579.1 | SEG:seg | : | : | : | : |
Description
V-type proton ATPase proteolipid subunit [Source:UniProtKB/TrEMBL;Acc:A5C5A3]
Coordinates
chr3:-:662174..664796
Molecular Weight (calculated)
16572.7 Da
IEP (calculated)
8.679
GRAVY (calculated)
0.954
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTFSGDETA PFFGFLGAAA ALVFSCMGAA YGTAKSGVGV ASMGVMRPEL VMKSIVPVVM AGVLGIYGLI IAVIISTGIN PKAKSYYLFD GYAHLSSGLA
101: CGLAGLSAGM AIGIVGDAGV RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ SRAE
101: CGLAGLSAGM AIGIVGDAGV RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ SRAE
001: MSTFSGDETA PFFGFLGAAA ALVFSCMGAA YGTAKSGVGV ASMGVMRPEL VMKSIVPVVM AGVLGIYGLI IAVIISTGIN PKAKSYYLFD GYAHLSSGLA
101: CGLAGLSAGM AIGIVGDAGV RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ SRAE
101: CGLAGLSAGM AIGIVGDAGV RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ SRAE
Arabidopsis Description
VHA-c3V-type proton ATPase subunit c1 [Source:UniProtKB/Swiss-Prot;Acc:P0DH92]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.