Factsheet for Solyc04g081090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
vacuole 6
extracellular 3
endoplasmic reticulum 4
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1
Solyc08g068350.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16510.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT2G16510.1	Solyc08g068350.2.1	AT4G32750.1	21798944
AT4G34720.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT4G34720.1	Solyc08g068350.2.1	AT4G32750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G34720.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	96.97	97.56
AT2G16510.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	96.97	97.56
VIT_03s0038g00790.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	96.97	97.56
TraesCS1D01G018300.1	Wheat	golgi	95.76	95.76
TraesCS1A01G019000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	95.76	95.76
Zm00001d053010_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.15
Zm00001d023542_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.15
Zm00001d004821_P002	Maize	extracellular	95.15	95.15
TraesCS5D01G130000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.15
TraesCS5B01G117600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.15
TraesCS5A01G118600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.15
KXG23066	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.15
EES09364	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.15
EES15730	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.15
Os12t0168900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	94.55	94.55
HORVU4Hr1G019840.1	Barley	vacuole	94.55	94.55
TraesCS4A01G206900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	94.55	94.55
TraesCS4B01G110500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	94.55	94.55
TraesCS4D01G108200.1	Wheat	golgi	94.55	94.55
HORVU1Hr1G002500.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	94.55	94.55
Os02t0550100-01	Rice	nucleus	95.15	94.01
Os11t0169900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	93.94	93.94
Os05t0106100-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	93.94	93.37
TraesCS1B01G022800.1	Wheat	endoplasmic reticulum	93.33	93.33
Zm00001d041882_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	94.55	90.7
Zm00001d035702_P001	Maize	endoplasmic reticulum, extracellular, vacuole	70.91	84.17
Os01t0962300-00	Rice	endoplasmic reticulum, plasma membrane, vacuole	83.03	83.03
HORVU5Hr1G036250.1	Barley	plastid	82.42	75.14
KXG21044	Sorghum	extracellular	45.45	61.98
CDY13486	Canola	endoplasmic reticulum, extracellular, vacuole	46.06	60.8
Zm00001d002976_P001	Maize	extracellular, plastid	35.15	59.18
CDY09753	Canola	endoplasmic reticulum, extracellular	44.24	55.73
CDX93877	Canola	endoplasmic reticulum	44.24	53.28
KRG89360	Soybean	extracellular	36.97	45.86
CDX99447	Canola	cytosol, vacuole	46.06	40.64
Solyc06g067880.2.1	Tomato	plastid	32.73	30.51
Solyc08g067480.2.1	Tomato	plastid	32.73	29.19

Protein Annotations

Gene3D:1.20.120.610	MapMan:24.1.1.1.2	InterPro:ATPase_proteolipid_c-like_dom	InterPro:ATPase_proteolipid_csu	InterPro:ATPase_proteolipid_su_C_euk	InterPro:F/V-ATP_Csub_sf
GO:GO:0000220	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0006811
GO:GO:0007035	GO:GO:0008150	GO:GO:0009987	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019725	GO:GO:0033177	GO:GO:0033179
GO:GO:0046961	UniProt:K4BVI8	PFAM:PF00137	PRINTS:PR00122	PANTHER:PTHR10263	PANTHER:PTHR10263:SF14
SUPFAM:SSF81333	EnsemblPlantsGene:Solyc04g081090.2	EnsemblPlants:Solyc04g081090.2.1	TIGRFAMs:TIGR01100	TMHMM:TMhelix	UniParc:UPI0002765C99
SEG:seg	:	:	:	:	:

Description

V-type proton ATPase proteolipid subunit [Source:UniProtKB/TrEMBL;Acc:K4BVI8]

Coordinates

chr4:-:65134960..65137166

Molecular Weight (calculated)

16588.7 Da

IEP (calculated)

8.189

GRAVY (calculated)

0.970

Length

165 amino acids

Sequence
(BLAST)

001: MASTFSGDET APFFGFLGAA AALVFSCMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV MAGVLGIYGL IIAVIISTGI NPKTKSYYLF DGYAHLSSGL
101: ACGLAGLSAG MAIGIVGDAG IGANAQQPKL FVGMILILIF AEALALYGLI VGIILSSRAG QSRAE

Best Arabidopsis Sequence Match ( AT1G19910.1 )
(BLAST)

001: MASTFSGDET APFFGFLGAA AALVFSCMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV MAGVLGIYGL IIAVIISTGI NPKAKSYYLF DGYAHLSSGL
101: ACGLAGLSAG MAIGIVGDAG VRANAQQPKL FVGMILILIF AEALALYGLI VGIILSSRAG QSRAE

Arabidopsis Description

VHA-C2V-type proton ATPase proteolipid subunit [Source:UniProtKB/TrEMBL;Acc:A0A178W2T3]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.