Factsheet for Solyc06g067880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2
extracellular 2
vacuole 2
endoplasmic reticulum 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073491	Potato	plastid	98.87	98.87
PGSC0003DMT400019560	Potato	plastid	98.87	98.87
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	90.96	92.53
KRH16027	Soybean	golgi, plasma membrane, plastid	91.53	92.05
KRH05091	Soybean	golgi, plasma membrane, plastid	91.53	92.05
Bra037052.1-P	Field mustard	plasma membrane, vacuole	42.37	91.46
EES01054	Sorghum	peroxisome, plasma membrane, plastid	90.4	90.91
Solyc08g067480.2.1	Tomato	plastid	94.35	90.27
Zm00001d011321_P002	Maize	peroxisome, plasma membrane, plastid	89.27	89.77
Zm00001d044445_P001	Maize	peroxisome, plasma membrane, plastid	89.27	89.77
Os01t0610100-01	Rice	peroxisome, plasma membrane, plastid	87.57	88.07
CDY39890	Canola	endoplasmic reticulum, plasma membrane, vacuole	87.57	87.57
CDY23329	Canola	endoplasmic reticulum, plasma membrane, vacuole	87.57	87.57
CDX75251	Canola	endoplasmic reticulum, plasma membrane, vacuole	87.57	87.57
CDX68854	Canola	endoplasmic reticulum, plasma membrane, vacuole	87.57	87.57
Bra011352.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	87.01	87.01
TraesCS3D01G234100.1	Wheat	peroxisome, plasma membrane, plastid	86.44	86.44
TraesCS3B01G249000.1	Wheat	peroxisome, plasma membrane, plastid	86.44	86.44
TraesCS3A01G218100.1	Wheat	peroxisome, plasma membrane, plastid	86.44	86.44
HORVU3Hr1G053400.1	Barley	peroxisome, plasma membrane, plastid	86.44	86.44
AT4G32530.2	Thale cress	endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole	88.14	74.29
GSMUA_Achr4P30710_001	Banana	extracellular, plasma membrane, plastid	90.4	72.07
AT2G25610.2	Thale cress	plastid	88.14	68.72
HORVU3Hr1G053390.1	Barley	plastid	86.44	66.81
GSMUA_Achr7P09940_001	Banana	golgi, plasma membrane	91.53	64.8
CDY13493	Canola	cytosol, plasma membrane, vacuole	58.19	62.42
Solyc04g081090.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	30.51	32.73

Protein Annotations

Gene3D:1.20.120.610	MapMan:24.1.1.1.2	InterPro:ATPase_proteolipid_c-like_dom	InterPro:ATPase_proteolipid_csu	InterPro:F/V-ATP_Csub_sf	GO:GO:0000220
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006811	GO:GO:0007035	GO:GO:0008150
GO:GO:0009987	GO:GO:0015078	GO:GO:0015991	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019725	GO:GO:0033177	GO:GO:0033179	GO:GO:0046961	UniProt:K4C7W3	PFAM:PF00137
PRINTS:PR00122	PANTHER:PTHR10263	PANTHER:PTHR10263:SF18	SUPFAM:SSF81333	EnsemblPlantsGene:Solyc06g067880.2	EnsemblPlants:Solyc06g067880.2.1
TMHMM:TMhelix	UniParc:UPI0002765F8B	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:42068896..42071035

Molecular Weight (calculated)

17970.3 Da

IEP (calculated)

8.626

GRAVY (calculated)

1.107

Length

177 amino acids

Sequence
(BLAST)

001: MAGPSSSWSR ALVQISPYTF AAVGIAIAIG VSVLGAAWGI YITGSSLIGA AIKAPRITSK NLISVIFCEA VAIYGVIVAI ILQTKLESVP ASQIYAPESL
101: RAGYAIFASG IIVGFANLVC GLCVGIIGSS CALSDAQNSS LFVKILVIEI FGSALGLFGV IVGIIMSAQA SWPSKGA

Best Arabidopsis Sequence Match ( AT4G32530.1 )
(BLAST)

001: MSGVVALGHA SSWGAALVRI SPYTFSAIGI AISIGVSVLG AAWGIYITGS SLIGAAIEAP RITSKNLISV IFCEAVAIYG VIVAIILQTK LESVPSSKMY
101: DAESLRAGYA IFASGIIVGF ANLVCGLCVG IIGSSCALSD AQNSTLFVKI LVIEIFGSAL GLFGVIVGII MSAQATWPTK

Arabidopsis Description

ATPase, F0/V0 complex, subunit C protein [Source:UniProtKB/TrEMBL;Acc:B3H4N3]
SUBAcon: [endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.