Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- extracellular 2
- vacuole 2
- endoplasmic reticulum 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400019560 | Potato | plastid | 100.0 | 100.0 |
| Solyc06g067880.2.1 | Tomato | plastid | 98.87 | 98.87 |
| KRH16027 | Soybean | golgi, plasma membrane, plastid | 92.66 | 93.18 |
| KRH05091 | Soybean | golgi, plasma membrane, plastid | 92.66 | 93.18 |
| PGSC0003DMT400065655 | Potato | plastid | 93.79 | 92.74 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 90.96 | 92.53 |
| EES01054 | Sorghum | peroxisome, plasma membrane, plastid | 91.53 | 92.05 |
| Bra037052.1-P | Field mustard | plasma membrane, vacuole | 42.37 | 91.46 |
| Zm00001d011321_P002 | Maize | peroxisome, plasma membrane, plastid | 90.4 | 90.91 |
| Zm00001d044445_P001 | Maize | peroxisome, plasma membrane, plastid | 90.4 | 90.91 |
| Os01t0610100-01 | Rice | peroxisome, plasma membrane, plastid | 88.7 | 89.2 |
| CDY23329 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 88.7 | 88.7 |
| CDY39890 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 88.7 | 88.7 |
| CDX75251 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 88.7 | 88.7 |
| CDX68854 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 88.7 | 88.7 |
| Bra011352.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 88.14 | 88.14 |
| TraesCS3D01G234100.1 | Wheat | peroxisome, plasma membrane, plastid | 87.57 | 87.57 |
| TraesCS3B01G249000.1 | Wheat | peroxisome, plasma membrane, plastid | 87.57 | 87.57 |
| TraesCS3A01G218100.1 | Wheat | peroxisome, plasma membrane, plastid | 87.57 | 87.57 |
| HORVU3Hr1G053400.1 | Barley | peroxisome, plasma membrane, plastid | 87.57 | 87.57 |
| AT4G32530.2 | Thale cress | endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole | 89.27 | 75.24 |
| GSMUA_Achr4P30710_001 | Banana | extracellular, plasma membrane, plastid | 89.27 | 71.17 |
| AT2G25610.2 | Thale cress | plastid | 89.27 | 69.6 |
| HORVU3Hr1G053390.1 | Barley | plastid | 87.57 | 67.69 |
| GSMUA_Achr7P09940_001 | Banana | golgi, plasma membrane | 91.53 | 64.8 |
| CDY13493 | Canola | cytosol, plasma membrane, vacuole | 58.19 | 62.42 |
Protein Annotations
| Gene3D:1.20.120.610 | EntrezGene:102588605 | EntrezGene:102603885 | MapMan:24.1.1.1.2 | InterPro:ATPase_proteolipid_c-like_dom | InterPro:ATPase_proteolipid_csu |
| InterPro:F/V-ATP_Csub_sf | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006811 |
| GO:GO:0008150 | GO:GO:0015078 | GO:GO:0015991 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0033177 |
| GO:GO:0033179 | UniProt:M1CS43 | PFAM:PF00137 | EnsemblPlantsGene:PGSC0003DMG400028549 | PGSC:PGSC0003DMG400028549 | EnsemblPlants:PGSC0003DMT400073491 |
| PRINTS:PR00122 | PANTHER:PTHR10263 | PANTHER:PTHR10263:SF18 | SUPFAM:SSF81333 | TMHMM:TMhelix | UniParc:UPI0002964C85 |
| RefSeq:XP_006338130.1 | RefSeq:XP_006356187.1 | SEG:seg | : | : | : |
Description
Vacuolar membrane ATPase subunit c'' [Source:PGSC_GENE;Acc:PGSC0003DMG400028549]
Coordinates
chr6:+:49633295..49635659
Molecular Weight (calculated)
18000.3 Da
IEP (calculated)
8.626
GRAVY (calculated)
1.094
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGPSSSWSR ALVQISPYTF SAIGIAIAIG VSVLGAAWGI YITGSSLIGA AIKAPRITSK NLISVIFCEA VAIYGVIVAI ILQTKLESVP ASQIYAPESL
101: RAGYAIFASG IIVGFANLVC GLCVGIIGSS CALSDAQNSS LFVKILVIEI FGSALGLFGV IVGIIMSAQA SWPSKGA
101: RAGYAIFASG IIVGFANLVC GLCVGIIGSS CALSDAQNSS LFVKILVIEI FGSALGLFGV IVGIIMSAQA SWPSKGA
001: MSGVVALGHA SSWGAALVRI SPYTFSAIGI AISIGVSVLG AAWGIYITGS SLIGAAIEAP RITSKNLISV IFCEAVAIYG VIVAIILQTK LESVPSSKMY
101: DAESLRAGYA IFASGIIVGF ANLVCGLCVG IIGSSCALSD AQNSTLFVKI LVIEIFGSAL GLFGVIVGII MSAQATWPTK
101: DAESLRAGYA IFASGIIVGF ANLVCGLCVG IIGSSCALSD AQNSTLFVKI LVIEIFGSAL GLFGVIVGII MSAQATWPTK
Arabidopsis Description
ATPase, F0/V0 complex, subunit C protein [Source:UniProtKB/TrEMBL;Acc:B3H4N3]
SUBAcon: [endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.