Factsheet for PGSC0003DMT400065655

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
extracellular 2
vacuole 2
endoplasmic reticulum 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g067480.2.1	Tomato	plastid	99.44	96.22
VIT_09s0002g05720.t01	Wine grape	extracellular, mitochondrion, plasma membrane, plastid	93.3	94.35
PGSC0003DMT400073491	Potato	plastid	92.74	93.79
PGSC0003DMT400019560	Potato	plastid	92.74	93.79
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	90.5	93.1
VIT_04s0008g04760.t01	Wine grape	endoplasmic reticulum, plasma membrane	91.06	92.09
EES01054	Sorghum	peroxisome, plasma membrane, plastid	87.15	88.64
Zm00001d011321_P002	Maize	peroxisome, plasma membrane, plastid	86.03	87.5
Zm00001d044445_P001	Maize	peroxisome, plasma membrane, plastid	86.03	87.5
HORVU3Hr1G053400.1	Barley	peroxisome, plasma membrane, plastid	85.47	86.44
TraesCS3A01G218100.1	Wheat	peroxisome, plasma membrane, plastid	85.47	86.44
TraesCS3B01G249000.1	Wheat	peroxisome, plasma membrane, plastid	85.47	86.44
TraesCS3D01G234100.1	Wheat	peroxisome, plasma membrane, plastid	85.47	86.44
Os01t0610100-01	Rice	peroxisome, plasma membrane, plastid	84.92	86.36
VIT_18s0086g00420.t01	Wine grape	extracellular, plasma membrane, plastid	29.61	84.13
GSMUA_Achr4P30710_001	Banana	extracellular, plasma membrane, plastid	89.94	72.52
VIT_07s0141g00500.t01	Wine grape	extracellular	30.17	72.0
HORVU3Hr1G053390.1	Barley	plastid	85.47	66.81
GSMUA_Achr7P09940_001	Banana	golgi, plasma membrane	89.94	64.4

Protein Annotations

Gene3D:1.20.120.610	EntrezGene:102588605	EntrezGene:102603885	MapMan:24.1.1.1.2	InterPro:ATPase_proteolipid_c-like_dom	InterPro:ATPase_proteolipid_csu
InterPro:F/V-ATP_Csub_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0016020	GO:GO:0016021	GO:GO:0033177
GO:GO:0033179	UniProt:M1CEE1	PFAM:PF00137	EnsemblPlantsGene:PGSC0003DMG400025542	PGSC:PGSC0003DMG400025542	EnsemblPlants:PGSC0003DMT400065655
PRINTS:PR00122	PANTHER:PTHR10263	PANTHER:PTHR10263:SF18	SUPFAM:SSF81333	TMHMM:TMhelix	UniParc:UPI000294DDA8
RefSeq:XP_006338130.1	RefSeq:XP_006356187.1	SEG:seg	:	:	:

Description

Vacuolar membrane ATPase subunit c'' [Source:PGSC_GENE;Acc:PGSC0003DMG400025542]

Coordinates

chr8:-:41087425..41091797

Molecular Weight (calculated)

18268.8 Da

IEP (calculated)

8.932

GRAVY (calculated)

1.141

Length

179 amino acids

Sequence
(BLAST)

001: MAVMGASSSW SRAMIQISPY TFSAVGIAIA IGVSVLGAAW GIYITGSSLI GAAIKAPRIT SKNLISVIFC EAVAIYGVIV AIILQTKLES VPASKIYAAE
101: SLRAGYAIFA SGIIVGFANL VCGLCVGIIG SSCALSDAQN STLFVKILVI EIFGSALGLF GVIVGIIMSA QATWPSKTA

Best Arabidopsis Sequence Match ( AT4G32530.1 )
(BLAST)

001: MSGVVALGHA SSWGAALVRI SPYTFSAIGI AISIGVSVLG AAWGIYITGS SLIGAAIEAP RITSKNLISV IFCEAVAIYG VIVAIILQTK LESVPSSKMY
101: DAESLRAGYA IFASGIIVGF ANLVCGLCVG IIGSSCALSD AQNSTLFVKI LVIEIFGSAL GLFGVIVGII MSAQATWPTK

Arabidopsis Description

ATPase, F0/V0 complex, subunit C protein [Source:UniProtKB/TrEMBL;Acc:B3H4N3]
SUBAcon: [endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.