Factsheet for Solyc08g067480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
endoplasmic reticulum 2
vacuole 2
extracellular 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065655	Potato	plastid	96.22	99.44
VIT_09s0002g05720.t01	Wine grape	extracellular, mitochondrion, plasma membrane, plastid	90.81	94.92
Solyc06g067880.2.1	Tomato	plastid	90.27	94.35
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	88.11	93.68
VIT_04s0008g04760.t01	Wine grape	endoplasmic reticulum, plasma membrane	88.65	92.66
EES01054	Sorghum	peroxisome, plasma membrane, plastid	84.86	89.2
Zm00001d011321_P002	Maize	peroxisome, plasma membrane, plastid	83.78	88.07
Zm00001d044445_P001	Maize	peroxisome, plasma membrane, plastid	83.78	88.07
HORVU3Hr1G053400.1	Barley	peroxisome, plasma membrane, plastid	83.24	87.01
TraesCS3A01G218100.1	Wheat	peroxisome, plasma membrane, plastid	83.24	87.01
TraesCS3B01G249000.1	Wheat	peroxisome, plasma membrane, plastid	83.24	87.01
TraesCS3D01G234100.1	Wheat	peroxisome, plasma membrane, plastid	83.24	87.01
Os01t0610100-01	Rice	peroxisome, plasma membrane, plastid	82.7	86.93
VIT_18s0086g00420.t01	Wine grape	extracellular, plasma membrane, plastid	29.19	85.71
VIT_07s0141g00500.t01	Wine grape	extracellular	29.73	73.33
GSMUA_Achr4P30710_001	Banana	extracellular, plasma membrane, plastid	87.57	72.97
HORVU3Hr1G053390.1	Barley	plastid	83.24	67.25
GSMUA_Achr7P09940_001	Banana	golgi, plasma membrane	88.11	65.2
Solyc04g081090.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	29.19	32.73

Protein Annotations

Gene3D:1.20.120.610	MapMan:24.1.1.1.2	InterPro:ATPase_proteolipid_c-like_dom	InterPro:ATPase_proteolipid_csu	InterPro:F/V-ATP_Csub_sf	GO:GO:0000220
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006811	GO:GO:0007035	GO:GO:0008150
GO:GO:0009987	GO:GO:0015078	GO:GO:0015991	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019725	GO:GO:0033177	GO:GO:0033179	GO:GO:0046961	UniProt:K4CLX4	PFAM:PF00137
PRINTS:PR00122	PANTHER:PTHR10263	PANTHER:PTHR10263:SF18	SUPFAM:SSF81333	EnsemblPlantsGene:Solyc08g067480.2	EnsemblPlants:Solyc08g067480.2.1
TMHMM:TMhelix	UniParc:UPI000276C28A	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:56497283..56501979

Molecular Weight (calculated)

18799.4 Da

IEP (calculated)

8.932

GRAVY (calculated)

1.131

Length

185 amino acids

Sequence
(BLAST)

001: MSAASTMAVM GASSSWSRAL IQISPYTFSA VGIAIAIGVS VLGAAWGIYI TGSSLIGAAI KAPRITSKNL ISVIFCEAVA IYGVIVAIIL QTKLESVPAS
101: KIYAAESLRA GYAIFASGII VGFANLVCGL CVGIIGSSCA LSDAQNSTLF VKILVIEIFG SALGLFGVIV GIIMSAQATW PSKTA

Best Arabidopsis Sequence Match ( AT4G32530.1 )
(BLAST)

001: MSGVVALGHA SSWGAALVRI SPYTFSAIGI AISIGVSVLG AAWGIYITGS SLIGAAIEAP RITSKNLISV IFCEAVAIYG VIVAIILQTK LESVPSSKMY
101: DAESLRAGYA IFASGIIVGF ANLVCGLCVG IIGSSCALSD AQNSTLFVKI LVIEIFGSAL GLFGVIVGII MSAQATWPTK

Arabidopsis Description

ATPase, F0/V0 complex, subunit C protein [Source:UniProtKB/TrEMBL;Acc:B3H4N3]
SUBAcon: [endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.