Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 5
- golgi 3
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0141g00500.t01 | Wine grape | extracellular | 88.89 | 74.67 |
| VIT_09s0002g05720.t01 | Wine grape | extracellular, mitochondrion, plasma membrane, plastid | 92.06 | 32.77 |
| VIT_04s0008g04760.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 84.13 | 29.94 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 82.54 | 29.89 |
| PGSC0003DMT400065655 | Potato | plastid | 84.13 | 29.61 |
| Os01t0610100-01 | Rice | peroxisome, plasma membrane, plastid | 82.54 | 29.55 |
| Zm00001d044445_P001 | Maize | peroxisome, plasma membrane, plastid | 82.54 | 29.55 |
| Zm00001d011321_P002 | Maize | peroxisome, plasma membrane, plastid | 82.54 | 29.55 |
| KRH16027 | Soybean | golgi, plasma membrane, plastid | 82.54 | 29.55 |
| KRH05091 | Soybean | golgi, plasma membrane, plastid | 82.54 | 29.55 |
| EES01054 | Sorghum | peroxisome, plasma membrane, plastid | 82.54 | 29.55 |
| Solyc08g067480.2.1 | Tomato | plastid | 85.71 | 29.19 |
| HORVU3Hr1G053400.1 | Barley | peroxisome, plasma membrane, plastid | 79.37 | 28.25 |
| TraesCS3D01G234100.1 | Wheat | peroxisome, plasma membrane, plastid | 79.37 | 28.25 |
| TraesCS3A01G218100.1 | Wheat | peroxisome, plasma membrane, plastid | 79.37 | 28.25 |
| TraesCS3B01G249000.1 | Wheat | peroxisome, plasma membrane, plastid | 79.37 | 28.25 |
| Bra011352.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 77.78 | 27.68 |
| CDX68854 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 77.78 | 27.68 |
| CDY39890 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 77.78 | 27.68 |
| CDY23329 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 77.78 | 27.68 |
| CDX75251 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 77.78 | 27.68 |
| AT4G32530.2 | Thale cress | endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole | 79.37 | 23.81 |
| GSMUA_Achr4P30710_001 | Banana | extracellular, plasma membrane, plastid | 79.37 | 22.52 |
| HORVU3Hr1G053390.1 | Barley | plastid | 79.37 | 21.83 |
| AT2G25610.2 | Thale cress | plastid | 77.78 | 21.59 |
| GSMUA_Achr7P09940_001 | Banana | golgi, plasma membrane | 84.13 | 21.2 |
| VIT_03s0038g00790.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 22.22 | 8.54 |
| VIT_18s0001g02650.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 22.22 | 8.54 |
| VIT_18s0001g15790.t01 | Wine grape | cytosol | 12.7 | 8.08 |
| VIT_18s0001g13630.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 20.63 | 7.93 |
| VIT_19s0014g04830.t01 | Wine grape | plasma membrane | 12.7 | 5.56 |
| CDY13493 | Canola | cytosol, plasma membrane, vacuole | 12.7 | 4.85 |
| Bra037052.1-P | Field mustard | plasma membrane, vacuole | 0.0 | 0.0 |
| VIT_18s0086g00440.t01 | Wine grape | plasma membrane | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.120.610 | MapMan:24.1.1.1.2 | ProteinID:CCB60818 | ProteinID:CCB60818.1 | InterPro:F/V-ATP_Csub_sf | UniProt:F6I1K1 |
| EMBL:FN596511 | GO:GO:0000220 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006810 | GO:GO:0007035 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019725 |
| GO:GO:0046961 | GO:GO:1902600 | PANTHER:PTHR10263 | PANTHER:PTHR10263:SF34 | SUPFAM:SSF81333 | TMHMM:TMhelix |
| UniParc:UPI0002109977 | ArrayExpress:VIT_18s0086g00420 | EnsemblPlantsGene:VIT_18s0086g00420 | EnsemblPlants:VIT_18s0086g00420.t01 | SEG:seg | : |
Description
No Description!
Coordinates
chr18:+:17731958..17732942
Molecular Weight (calculated)
6428.0 Da
IEP (calculated)
12.248
GRAVY (calculated)
0.946
Length
63 amino acids
Sequence
(BLAST)
(BLAST)
1: MVGASSSWSR ALVQISPSTF SVIGIAIGIG VSVLGAAWGI YITGSILIGA IKAPRITSKN LIR
001: MSGVVALGHA SSWGAALVRI SPYTFSAIGI AISIGVSVLG AAWGIYITGS SLIGAAIEAP RITSKNLISV IFCEAVAIYG VIVAIILQTK LESVPSSKMY
101: DAESLRAGYA IFASGIIVGF ANLVCGLCVG IIGSSCALSD AQNSTLFVKI LVIEIFGSAL GLFGVIVGII MSAQATWPTK
101: DAESLRAGYA IFASGIIVGF ANLVCGLCVG IIGSSCALSD AQNSTLFVKI LVIEIFGSAL GLFGVIVGII MSAQATWPTK
Arabidopsis Description
ATPase, F0/V0 complex, subunit C protein [Source:UniProtKB/TrEMBL;Acc:B3H4N3]
SUBAcon: [endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.