Factsheet for VIT_18s0001g02650.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
vacuole 6
extracellular 3
endoplasmic reticulum 4
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g00790.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
VIT_18s0001g13630.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	99.39	99.39
EES15730	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	96.95	96.36
KXG23066	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	96.95	96.36
TraesCS1D01G018300.1	Wheat	golgi	96.95	96.36
TraesCS1A01G019000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	96.95	96.36
Zm00001d053010_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	96.34	95.76
EES09364	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	96.34	95.76
Zm00001d023542_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	96.34	95.76
Zm00001d004821_P002	Maize	extracellular	96.34	95.76
TraesCS5D01G130000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	96.34	95.76
TraesCS5B01G117600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	96.34	95.76
TraesCS5A01G118600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	96.34	95.76
Os02t0550100-01	Rice	nucleus	96.95	95.21
Os05t0106100-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	96.34	95.18
Os12t0168900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	95.73	95.15
HORVU1Hr1G002500.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	95.73	95.15
HORVU4Hr1G019840.1	Barley	vacuole	95.73	95.15
TraesCS4D01G108200.1	Wheat	golgi	95.73	95.15
TraesCS4B01G110500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	95.73	95.15
TraesCS4A01G206900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	95.73	95.15
Os11t0169900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	95.12	94.55
TraesCS1B01G022800.1	Wheat	endoplasmic reticulum	93.9	93.33
Zm00001d041882_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	95.73	91.28
Zm00001d035702_P001	Maize	endoplasmic reticulum, extracellular, vacuole	72.56	85.61
Os01t0962300-00	Rice	endoplasmic reticulum, plasma membrane, vacuole	84.76	84.24
HORVU5Hr1G036250.1	Barley	plastid	84.76	76.8
VIT_18s0001g15790.t01	Wine grape	cytosol	40.85	67.68
KXG21044	Sorghum	extracellular	47.56	64.46
Zm00001d002976_P001	Maize	extracellular, plastid	34.76	58.16
VIT_09s0002g05720.t01	Wine grape	extracellular, mitochondrion, plasma membrane, plastid	32.93	30.51
VIT_04s0008g04760.t01	Wine grape	endoplasmic reticulum, plasma membrane	32.32	29.94
VIT_18s0086g00440.t01	Wine grape	plasma membrane	16.46	22.88
VIT_07s0141g00500.t01	Wine grape	extracellular	10.37	22.67
VIT_18s0086g00420.t01	Wine grape	extracellular, plasma membrane, plastid	8.54	22.22
VIT_19s0014g04830.t01	Wine grape	plasma membrane	16.46	18.75

Protein Annotations

Gene3D:1.20.120.610	EntrezGene:100248726	EntrezGene:100252288	wikigene:100252288	MapMan:24.1.1.1.2	UniProt:A5C5A3
EMBL:AM482839	InterPro:ATPase_proteolipid_c-like_dom	InterPro:ATPase_proteolipid_csu	InterPro:ATPase_proteolipid_su_C_euk	ProteinID:CAN62098	ProteinID:CAN62098.1
ProteinID:CBI19010	ProteinID:CBI19010.3	ProteinID:CBI37981	ProteinID:CBI37981.3	InterPro:F/V-ATP_Csub_sf	EMBL:FN595227
EMBL:FN596508	GO:GO:0000220	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810
GO:GO:0006811	GO:GO:0007035	GO:GO:0008150	GO:GO:0009987	GO:GO:0015078	GO:GO:0015991
GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019725	GO:GO:0033177
GO:GO:0033179	GO:GO:0046961	EntrezGene:LOC100252288	wikigene:LOC100252288	PFAM:PF00137	PRINTS:PR00122
PANTHER:PTHR10263	PANTHER:PTHR10263:SF14	SUPFAM:SSF81333	TIGR:TC58045	TIGRFAMs:TIGR01100	TMHMM:TMhelix
UniParc:UPI0000138E62	ArrayExpress:VIT_18s0001g02650	EnsemblPlantsGene:VIT_18s0001g02650	EnsemblPlants:VIT_18s0001g02650.t01	unigene:Vvi.1223	RefSeq:XP_002285861
RefSeq:XP_002285861.1	RefSeq:XP_010647579.1	SEG:seg	:	:	:

Description

V-type proton ATPase proteolipid subunit [Source:UniProtKB/TrEMBL;Acc:A5C5A3]

Coordinates

chr18:-:2866342..2870749

Molecular Weight (calculated)

16572.7 Da

IEP (calculated)

8.679

GRAVY (calculated)

0.954

Length

164 amino acids

Sequence
(BLAST)

001: MSTFSGDETA PFFGFLGAAA ALVFSCMGAA YGTAKSGVGV ASMGVMRPEL VMKSIVPVVM AGVLGIYGLI IAVIISTGIN PKAKSYYLFD GYAHLSSGLA
101: CGLAGLSAGM AIGIVGDAGV RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ SRAE

Best Arabidopsis Sequence Match ( AT2G16510.1 )
(BLAST)

001: MSTFSGDETA PFFGFLGAAA ALVFSCMGAA YGTAKSGVGV ASMGVMRPEL VMKSIVPVVM AGVLGIYGLI IAVIISTGIN PKAKSYYLFD GYAHLSSGLA
101: CGLAGLSAGM AIGIVGDAGV RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ SRAE

Arabidopsis Description

VHA-c3V-type proton ATPase subunit c1 [Source:UniProtKB/Swiss-Prot;Acc:P0DH92]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.