Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000055_P001 | |
| Zm00001d053306_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0550100-01 | Rice | nucleus | 88.49 | 73.65 |
| Os05t0106100-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 87.77 | 73.49 |
| AT1G19910.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 86.33 | 72.73 |
| AT2G16510.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 85.61 | 72.56 |
| AT4G34720.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 85.61 | 72.56 |
| AT4G38920.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 85.61 | 72.56 |
| VIT_03s0038g00790.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 85.61 | 72.56 |
| VIT_18s0001g02650.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 85.61 | 72.56 |
| Zm00001d004821_P002 | Maize | extracellular | 85.61 | 72.12 |
| Zm00001d023542_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 85.61 | 72.12 |
| Zm00001d053010_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 85.61 | 72.12 |
| VIT_18s0001g13630.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 84.89 | 71.95 |
| Bra025781.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 84.89 | 71.52 |
| Solyc04g081090.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 84.17 | 70.91 |
| KRH76682 | Soybean | nucleus | 83.45 | 70.73 |
| Bra007980.1-P | Field mustard | cytosol | 62.59 | 70.73 |
| Zm00001d041882_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 84.89 | 68.6 |
| VIT_18s0001g15790.t01 | Wine grape | cytosol | 47.48 | 66.67 |
| CDY13486 | Canola | endoplasmic reticulum, extracellular, vacuole | 55.4 | 61.6 |
| Bra023950.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 55.4 | 61.6 |
| Zm00001d002976_P001 | Maize | extracellular, plastid | 42.45 | 60.2 |
| AT1G75630.2 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 86.33 | 60.0 |
| CDY09753 | Canola | endoplasmic reticulum, extracellular | 51.8 | 54.96 |
| Bra012197.1-P | Field mustard | plastid | 70.5 | 52.69 |
| CDX93877 | Canola | endoplasmic reticulum | 50.36 | 51.09 |
| KXG21044 | Sorghum | extracellular | 42.45 | 48.76 |
| KRG89360 | Soybean | extracellular | 44.6 | 46.62 |
| CDX99447 | Canola | cytosol, vacuole | 53.24 | 39.57 |
| Bra010688.1-P | Field mustard | extracellular | 15.83 | 26.83 |
| Zm00001d011321_P002 | Maize | peroxisome, plasma membrane, plastid | 26.62 | 21.02 |
| Zm00001d044445_P001 | Maize | peroxisome, plasma membrane, plastid | 26.62 | 21.02 |
| CDY54164 | Canola | plasma membrane | 51.8 | 17.27 |
| GSMUA_Achr3P19110_001 | Banana | plasma membrane | 1.44 | 3.85 |
Protein Annotations
| Gene3D:1.20.120.610 | MapMan:24.1.1.1.2 | UniProt:A0A1D6LI10 | ProteinID:AQK79497.1 | InterPro:ATPase_proteolipid_c-like_dom | InterPro:ATPase_proteolipid_csu |
| InterPro:ATPase_proteolipid_su_C_euk | InterPro:F/V-ATP_Csub_sf | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0006810 | GO:GO:0006811 |
| GO:GO:0008150 | GO:GO:0015078 | GO:GO:0015991 | GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0033177 | GO:GO:0033179 | PFAM:PF00137 | PRINTS:PR00122 | PANTHER:PTHR10263 | PANTHER:PTHR10263:SF35 |
| SUPFAM:SSF81333 | TIGRFAMs:TIGR01100 | TMHMM:TMhelix | UniParc:UPI000842D2CC | EnsemblPlantsGene:Zm00001d035702 | EnsemblPlants:Zm00001d035702_P001 |
| EnsemblPlants:Zm00001d035702_T001 | SEG:seg | : | : | : | : |
Description
V-type proton ATPase subunit c4
Coordinates
chr6:-:41777881..41783123
Molecular Weight (calculated)
13836.4 Da
IEP (calculated)
7.749
GRAVY (calculated)
1.088
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASTFSGDE TAPFFGFLGA AAALVFSCMG AAYGTAKSGV GVASMGVMRP ELVMKSIVPV VMAGVLGIYG LIIAVIISTG INPKAKPYFL FDGYAHLSSG
101: LACGLAGLAA GMAIGIVGDA GVRYCNTLIA VAILCTCPC
101: LACGLAGLAA GMAIGIVGDA GVRYCNTLIA VAILCTCPC
001: MASTFSGDET APFFGFLGAA AALVFSCMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV MAGVLGIYGL IIAVIISTGI NPKAKSYYLF DGYAHLSSGL
101: ACGLAGLSAG MAIGIVGDAG VR
101: ACGLAGLSAG MAIGIVGDAG VR
Arabidopsis Description
VHA-C2V-type proton ATPase proteolipid subunit [Source:UniProtKB/TrEMBL;Acc:A0A178W2T3]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.