Factsheet for Bra010688.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011377.1-P
Bra024839.1-P
Bra024840.1-P
Bra034532.1-P
Bra037044.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16510.1	Bra024839.1-P	AT2G01950.1	19000166
AT2G16510.1	Bra024840.1-P	AT2G01950.1	19000166
AT2G16510.1	Bra011377.1-P	AT4G32750.1	21798944
AT2G16510.1	Bra034532.1-P	AT4G32750.1	21798944
AT2G16510.1	Bra037044.1-P	AT4G32750.1	21798944
AT4G34720.1	Bra024839.1-P	AT2G01950.1	19000166
AT4G34720.1	Bra024840.1-P	AT2G01950.1	19000166
AT4G34720.1	Bra011377.1-P	AT4G32750.1	21798944
AT4G34720.1	Bra034532.1-P	AT4G32750.1	21798944
AT4G34720.1	Bra037044.1-P	AT4G32750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G34720.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	59.76	29.88
AT2G16510.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	59.76	29.88
VIT_03s0038g00790.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	59.76	29.88
Bra025781.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	59.76	29.7
Os11t0169900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	57.32	28.48
Zm00001d053010_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	57.32	28.48
Os12t0168900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	57.32	28.48
TraesCS1A01G019000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	57.32	28.48
TraesCS1B01G022800.1	Wheat	endoplasmic reticulum	57.32	28.48
TraesCS1D01G018300.1	Wheat	golgi	57.32	28.48
TraesCS4A01G206900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	57.32	28.48
TraesCS4B01G110500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	57.32	28.48
TraesCS4D01G108200.1	Wheat	golgi	57.32	28.48
TraesCS5A01G118600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	57.32	28.48
TraesCS5B01G117600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	57.32	28.48
TraesCS5D01G130000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	57.32	28.48
Zm00001d004821_P002	Maize	extracellular	57.32	28.48
Zm00001d023542_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	57.32	28.48
EES09364	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	57.32	28.48
KXG23066	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	57.32	28.48
EES15730	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	57.32	28.48
HORVU1Hr1G002500.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	57.32	28.48
HORVU4Hr1G019840.1	Barley	vacuole	57.32	28.48
Os05t0106100-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	57.32	28.31
Os02t0550100-01	Rice	nucleus	57.32	28.14
Zm00001d041882_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	57.32	27.33
HORVU5Hr1G036250.1	Barley	plastid	57.32	25.97
Bra037052.1-P	Field mustard	plasma membrane, vacuole	25.61	25.61
Os01t0962300-00	Rice	endoplasmic reticulum, plasma membrane, vacuole	50.0	24.85
KXG21044	Sorghum	extracellular	29.27	19.83
Bra007980.1-P	Field mustard	cytosol	25.61	17.07
Bra012197.1-P	Field mustard	plastid	36.59	16.13
Zm00001d035702_P001	Maize	endoplasmic reticulum, extracellular, vacuole	26.83	15.83
KRG89360	Soybean	extracellular	23.17	14.29
Bra011352.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	24.39	11.3
Bra023950.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	7.32	4.8
Zm00001d002976_P001	Maize	extracellular, plastid	2.44	2.04

Protein Annotations

Gene3D:1.20.120.610	MapMan:24.1.1.1.2	InterPro:ATPase_proteolipid_c-like_dom	EnsemblPlantsGene:Bra010688	EnsemblPlants:Bra010688.1	EnsemblPlants:Bra010688.1-P
InterPro:F/V-ATP_Csub_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015078	GO:GO:0015991	GO:GO:0016020	GO:GO:0016021	GO:GO:0033177	UniProt:M4D2I8
PFAM:PF00137	PANTHER:PTHR10263	PANTHER:PTHR10263:SF13	SUPFAM:SSF81333	TMHMM:TMhelix	UniParc:UPI000254695E

Description

AT4G38920 (E=2e-018) AVA-P3, ATVHA-C3 | ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3); ATPase

Coordinates

chrA08:-:15997584..15999782

Molecular Weight (calculated)

8575.0 Da

IEP (calculated)

8.215

GRAVY (calculated)

1.072

Length

82 amino acids

Sequence
(BLAST)

1: MFHQLCPSLF RSPCGLAGLS AGMAIGIVGD AGISECTTTK ALCGMILILI FAKALSLYGL IVDIILCSRA GQARVEITLK VF

Best Arabidopsis Sequence Match ( AT4G38920.2 )
(BLAST)

001: MGAAYGTAKS GVGVASMGVM RPELVMKSIV PVVMAGVLGI YGLIIAVIIS TGINPKAKSY YLFDGYAHLS SGLACGLAGL SAGMAIGIVG DAGVRANAQQ
101: PKLFVGMILI LIFAEALALY GLIVGIILSS RAGQSRAE

Arabidopsis Description

VHA-c3V-type proton ATPase subunit c1 [Source:UniProtKB/Swiss-Prot;Acc:P0DH92]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.